others/
others2/
tutorial/
+zephyr/
#
*/*/*/*/*/*/*/tclIndex
EOS_GIT_REPOSITRY_DATA_NOUSER=git://git.sourceforge.jp/gitroot/eos/data.git
EOS_GIT_REPOSITRY_OTHERS= git.sourceforge.jp:/gitroot/eos/others.git
EOS_GIT_REPOSITRY_OTHERS_NOUSER=git://git.sourceforge.jp/gitroot/eos/others.git
+EOS_GIT_REPOSITRY_ZEPHYR= git.sourceforge.jp:/gitroot/eos/zephyr.git
+EOS_GIT_REPOSITRY_ZEPHYR_NOUSER=git://git.sourceforge.jp/gitroot/eos/zephyr.git
EOS_GIT_REPOSITRY_HOSTDEPEND=git.sourceforge.jp:/gitroot/eos/hostdepend
+EOS_GIT_REPOSITRY_HOSTDEPEND_NOUSER=git://git.sourceforge.jp/gitroot/eos/hostdepend
help::
@echo ">> Help"
@echo " $$ make git-merge or git-merge[-all|-data|-tutorial|-optional|-others]"
@echo " $$ make setting"
@echo "---- To init git repository ----"
- @echo " $$ make git-init or git-init[-all|-data|-tutorial|-optional|-others]"
+ @echo " $$ make git-init or git-init[-all|-zephyr|-data|-tutorial|-optional|-others]"
@echo "---- To clonse git repository ----"
- @echo " $$ make git-clone or git-clone[-all|-data|-tutorial|-optional|-others]"
+ @echo " $$ make git-clone or git-clone[-all|-zephyr|-data|-tutorial|-optional|-others]"
@echo "---- option ----"
@echo " [] : base only"
+ @echo " [-zephyr] : zephyr (for GUI/browser)"
@echo " [-data] : data (for test)"
@echo " [-tutorial] : tutorial"
@echo " [-optional] : optional(for documents)"
fi; \
fi;
-git-fetch-all:: git-fetch git-fetch-data git-fetch-optional git-fetch-tutorial git-fetch-others
+#
+# fetch
+#
+git-fetch-all:: git-fetch fit-fetch-zephyr git-fetch-data git-fetch-optional git-fetch-tutorial git-fetch-others
git-fetch::git-pull-hostdepend
@echo "fetch: base directory"
@echo "pull: hostdepend directory"
@cd hostdepend/$${EOS_HOSTDIR}/; git pull hostdepend$${EOS_HOSTDIR} master || echo "No files to be fetched"
+git-fetch-zephyr::
+ cd zephyr; git fetch zephyr master --tags ; git log -1
+
git-fetch-data::
cd data ; git fetch data master --tags ; git log -1
git-fetch-others::
cd others ; git fetch others master --tags ; git log -1
-git-merge-all:: git-merge git-merge-data git-merge-optional git-merge-tutorial git-merge-others
+#
+# merge
+#
+git-merge-all:: git-merge git-merge-zephyr git-merge-data git-merge-optional git-merge-tutorial git-merge-others
git-merge::
cd . ; git log -1; git merge FETCH_HEAD
+git-merge-zephyr::
+ cd zephyr ; git log -1; git merge FETCH_HEAD
+
git-merge-data::
cd data ; git log -1; git merge FETCH_HEAD
# Nickname
#
-git-init-all:: git-init git-init-data git-init-optional git-init-tutorial git-init-others
+# init
+git-init-all:: git-init git-init-zephyr git-init-data git-init-optional git-init-tutorial git-init-others
git-init:: git-add-hostdepend
if [ ! -d .git ] ; then git init ; fi
@export ORIGINNAME=data; \
make git-remote-add-data;
+git-init-zephyr::
+ if [ ! -d zephyr ] ; then mkdir zephyr ; fi
+ cd zephyr; \
+ if [ ! -d .git ] ; then git init ; fi ;
+ @export ORIGINNAME=zephyr; \
+ make git-remote-add-zephyr;
+
git-init-optional::
if [ ! -d optional ] ; then mkdir optional; fi
if [ ! -L doc ] ; then ln -sf optional/doc . ; fi
if [ ! -d others2 ] ; then mkdir others2; fi
cd others2 ; git remote add others2 $${EOS_GITUSER}@$(EOS_GIT_REPOSITRY_OTHERS)
+# clone
+
git-clone-all:: git-clone
@if [ ! -z "$${EOS_HOME}" -a -d "$${EOS_HOME}" ] ; then \
cd $${EOS_HOME} ; \
fi; \
fi;
+git-clone-zephyr::
+ if [ ! -d zephyr] ; then mkdir zephyr; fi
+ @cd zephyr; if [ ! -d .git ] ; \
+ then \
+ if [ -z $${EOS_GITUSER} ] ; then \
+ git clone --depth 1 $(EOS_GIT_REPOSITRY_ZEPHYR_NOUSER) ./ ; \
+ else \
+ git clone --depth 1 $${EOS_GITUSER}@$(EOS_GIT_REPOSITRY_ZEPHYR) ./; \
+ fi ; \
+ cd ../ ; \
+ export ORIGINNAME=zephyr; \
+ make git-remote-add-zephyr; \
+ fi
+
git-clone-data::
if [ ! -d data ] ; then mkdir data; fi
@cd data; if [ ! -d .git ] ; \
export ORIGINNAME=others; \
make git-remote-add-others; \
fi
-
+#
+# add
+#
git-remote-add::
@if [ ! -z "$$ORIGINNAME" -a ! -z "$${EOS_HOME}" -a -d "$${EOS_HOME}" ]; then \
cd $${EOS_HOME}; \
fi ; \
fi;
+git-remote-add-zephyr::
+ @if [ ! -z "$$ORIGINNAME" ]; then \
+ cd $$ORIGINNAME; \
+ SSS=`git remote -v | awk '{print $$1}' | grep data`; if [ ! -z "$$SSS" ] ; then git remote rm zephyr; fi ; \
+ if [ -z $${EOS_GITUSER} ] ; then \
+ git remote add zephyr $(EOS_GIT_REPOSITRY_ZEPHYR_NOUSER); \
+ else \
+ git remote add zephyr $${EOS_GITUSER}@$(EOS_GIT_REPOSITRY_ZEPHYR); \
+ fi ; \
+ fi;
+
git-remote-add-data::
@if [ ! -z "$$ORIGINNAME" ]; then \
cd $$ORIGINNAME; \
#LIBCUDA = -L$(EOS_HOME)/util/$(OSTYPE)/cuda/lib64 -L$(EOS_HOME)/util/$(OSTYPE)/cuda/lib64 -lcudart -lcufft
LIBCUDA = -L$(EOS_HOME)/util/$(OSTYPE)/cuda/lib -lcudart -lcufft
-#HOSTDEPENDENTLIB += $(LIBCUDA)
+HOSTDEPENDENTLIB += $(LIBCUDA)
char seperator[4];
dmFileInteger4 ninfo;
dmFileInteger4* info;
+ long pValue; // Offset
void* value; // Array or value
void** value2; // Struct
void** value3; // Array of Struct
char seperator[4];
dmFileInteger8 ninfo;
dmFileInteger8* info;
+ long pValue;
void* value; // Array or value
void** value2; // Struct
void** value3; // Array of Struct
float Cx;
float Cy;
int flagAverage;
+ int flagAzimuth;
+ int NAzimuth;
+ floatVector* azimuth;
} lmrcImageRadialDistributionInfo;
/* struct end */
#include <time.h>
#define DEBUG
+#undef DEBUG2
#include "../inc/pdbFile.h"
#include "String.h"
#include "eosCuda.h"
} else {
floatVectorInit(&v, 4);
v.data[3] = 1.0;
+
+#ifdef DEBUG
+ {
+ int ii, jj;
+ for(ii=0; ii<4; ii++) {
+ for(jj=0; jj<4; jj++) {
+ DEBUGPRINT1("%f ", Matrix[ii][jj]);
+ }
+ DEBUGPRINT("\n");
+ }
+ }
+#endif
pdbFileTop(pdb);
while(1) {
if(0==strncmp(pdb->PDB->Record, pdbRecordAtom, PDB_FILE_RECORD_LENGTH)
matrix3DMultiplyVector(&v, Matrix);
- //DEBUGPRINT3("%f %f %f\n", Matrix[3][0], Matrix[3][1], Matrix[3][2]);
- //DEBUGPRINT2("x %f -> %f\n", pdb->PDB->Coord.x, v.data[0]);
- //DEBUGPRINT2("y %f -> %f\n", pdb->PDB->Coord.y, v.data[1]);
- //DEBUGPRINT2("z %f -> %f\n", pdb->PDB->Coord.z, v.data[2]);
+#ifdef DEBUG2
+ DEBUGPRINT3("%f %f %f\n", Matrix[3][0], Matrix[3][1], Matrix[3][2]);
+ DEBUGPRINT2("x %f -> %f\n", pdb->PDB->Coord.x, v.data[0]);
+ DEBUGPRINT2("y %f -> %f\n", pdb->PDB->Coord.y, v.data[1]);
+ DEBUGPRINT2("z %f -> %f\n", pdb->PDB->Coord.z, v.data[2]);
+#endif
pdb->PDB->Coord.x = v.data[0];
pdb->PDB->Coord.y = v.data[1];
--- /dev/null
+OBJECTNAME = eosBayes
+EXTRA_INC =
+EXTRA_CCOPTS =
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+DIRS = src inc doc
+
+all:
+ for dir in ${DIRS} ; \
+ do \
+ $(CD) $${dir}; $(MAKE) all; $(CD) ..; \
+ done
+
+install:
+ for dir in ${DIRS}; \
+ do \
+ ${CD} $${dir} ; $(MAKE) install; $(CD) ..; \
+ done
+
+debug:
+ for dir in ${DIRS} ; \
+ do \
+ $(CD) $${dir}; $(MAKE) debug; $(CD) ..; \
+ done
+
+install-debug:
+ for dir in ${DIRS}; \
+ do \
+ ${CD} $${dir} ; $(MAKE) install-debug; $(CD) ..; \
+ done
+
+clean:
+ for dir in ${DIRS} ; \
+ do \
+ $(CD) $${dir}; $(MAKE) clean; $(CD) ..; \
+ done
+
+depend:
+ for dir in ${DIRS} ; \
+ do \
+ $(CD) $${dir}; $(MAKE) depend; $(CD) ..; \
+ done
+
+put:
+ for dir in ${DIRS} ; \
+ do \
+ $(CD) $${dir}; $(MAKE) put; $(CD) ..; \
+ done
+
+check:
+ @cd src; \
+ if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) -f src/Makefile
+ @$(RM) -f inc/Makefile
+ @$(RM) -f doc/Makefile
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/inc/Makefile inc/Makefile
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/doc/Makefile doc/Makefile
+ @rm -f src/.Depend src/.Source
+ @touch src/$(OSTYPE)/.Depend
+ @touch src/$(OSTYPE)/.Source
+ @touch src/.CCHeader
+ @touch src/.CHeader
+ @touch src/.Wish
+ @touch src/.Ruby
+ @cd inc; make install
+ @cd src; make install-ascii
+
+#
+# CVS
+#
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit -R
+
+#
+# Backup
+#
+backup:
+ @cd ../../../.. ; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*
+
+backup-all:
+ @cd ../../../.. ; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*
+
+#
+# Distribution
+#
+distribute:
+ @cd ../../../.. ; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../.. ; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+include Config/Target.inc
+
--- /dev/null
+include ../../../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+
+SOURCEDOC = $(OBJECTNAME).html
+DOCDSTDIR = $(EOS_HOME)/doc/Objects
+TARGETDOC = $(DOCDSTDIR)/$(SOURCEDOC)
+
+all: $(SOURCEDOC)
+
+install : $(TARGETDOC)
+
+$(TARGETDOC):$(SOURCEDOC)
+ $(INSTALL) -m 444 *.html $(DOCDSTDIR)
+ @cd $(DOCDSTDIR); make
+
+$(SOURCEDOC) : .$(SOURCEDOC) .header .footer ../inc/$(OBJECTNAME).h Makefile ../src/*.c
+ @echo Creating $(OBJECTNAME).html
+ @cat .header > $(SOURCEDOC)
+ @#htmlUpdateTime >> $(SOURCEDOC)
+ @cat .$(SOURCEDOC) >> $(SOURCEDOC)
+ @echo \<HR\> >> $(SOURCEDOC)
+ @echo "<A NAME=\"Information\">" >> $(SOURCEDOC)
+ @echo "<H2>Information from source codes</H2>" >> $(SOURCEDOC)
+ @echo "</A>" >> $(SOURCEDOC)
+ @echo "<PRE>" >> $(SOURCEDOC)
+ -@ident ../src/*.c >> $(SOURCEDOC)
+ @echo "</PRE>" >> $(SOURCEDOC)
+ @echo \<HR\> >> $(SOURCEDOC)
+ @echo \<A NAME=\"include\"\>>> $(SOURCEDOC)
+ @echo "<H2>$(OBJECTNAME).h</H2>">> $(SOURCEDOC)
+ @echo \</A\> >>$(SOURCEDOC)
+ @echo \<PRE\> >> $(SOURCEDOC)
+ @cat ../inc/$(OBJECTNAME).h >> $(SOURCEDOC)
+ @echo \</PRE\> >> $(SOURCEDOC)
+ @cat .footer >> $(SOURCEDOC)
+
+clean:
+
+depend:
--- /dev/null
+include ../../../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+
+INCFILE = $(OBJECTNAME).h
+
+all:
+
+install:$(EOS_HOME)/include/$(INCFILE)
+
+$(EOS_HOME)/include/$(INCFILE):$(INCFILE)
+ if [ ! -d $(EOS_HOME)/include ] ; then \
+ mkdir $(EOS_HOME)/include ; \
+ fi
+ $(INSTALL) -m 444 $(INCFILE) $(EOS_HOME)/include/
+
+clean:
+ $(RM) -f *.bak
+
+depend:
+ $(RM) -f *.bak
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update
+
+cvscommit::
+ @echo "cvs -d $(EOS_CVSROOT) commit"
+
+cvsadd::
+ @echo "cvs -d $(EOS_CVSROOT) add"
--- /dev/null
+#ifndef EOS_BAYES_H
+#define EOS_BAYES_H
+
+typedef struct eosBayesDistribution {
+ float min;
+ float max;
+ float delta;
+ int n;
+ float* prob;
+} eosBayesDistribution;
+
+
+typedef struct eosBayes {
+ int numDistribution;
+ eosBayesDistribution* prior;
+ eosBayesDistribution* posterior;
+
+ int numLikelihood;
+ eosBayesDistribution* likelihood;
+} eosBayes;
+
+
+#endif /* EOS_BAYES_H */
--- /dev/null
+SHELL=/bin/ksh
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+include $(OSTYPE)/.Source
+include .CHeader
+include .CCHeader
+include .Wish
+include .Ruby
+
+LIBNAME=lib$(OBJECTNAME).a
+SHAREDLIB=lib$(OBJECTNAME).so
+LIBNAMEDEBUG=lib$(OBJECTNAME).debug.a
+
+DSTDIR=../../../../../lib/$(OSTYPE)/
+SOURCE=$(OSTYPE)/.Source
+ARCHTEMPLATEDIR=$(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH
+
+all: hostdepend static-lib shared-lib ruby-lib debug
+ @echo LIBNAME:$(LIBNAME)
+ @echo OBJECTNAME:$(OBJECTNAME)
+
+hostdepend:
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent ; \
+ fi
+
+debug: debug-lib
+
+static-lib::
+ @echo static-lib:LIBNAME:$(LIBNAME) ; \
+ $(RM) -f $(OSTYPE)/Makefile; \
+ $(CP) $(ARCHTEMPLATEDIR)/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(LIBNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME)
+
+shared-lib::
+ @echo shared-lib:LIBNAME:$(LIBNAME) ; \
+ $(RM) -f $(OSTYPE)/Makefile; \
+ $(CP) $(ARCHTEMPLATEDIR)/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(SHAREDLIB) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME)
+
+ruby-lib::
+ @if [ -d Swig ]; then \
+ echo "--- Swig ---"; \
+ cd Swig; \
+ if [ -f extconf.rb ] ; then \
+ swig -ruby -I/usr/include -I$(EOS_HOME)/include *.i ; \
+ ruby extconf.rb --with-Eos-include=$(EOS_HOME)/include --with-Eos-lib=$(EOS_HOME)/lib/$(OSTYPE) --with-opt-lib=$LD_LIBRARY_PATH --with-opt-lib=$(EOS_HOME)/util/$(OSTYPE)/lib --with-GL-lib=/usr/lib ; \
+ make ; \
+ make sitearchdir=$(EOS_HOME)/lib/$(OSTYPE) install; \
+ fi ; \
+ fi
+
+debug-lib::
+ @cd $(OSTYPE); \
+ $(RM) -f Makefile; \
+ $(CP) $(ARCHTEMPLATEDIR)/Makefile Makefile ; \
+ $(MAKE) $(LIBNAMEDEBUG) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME)
+
+clean:
+ rm -f *.[oa] *.debugo *.cudagdbo *.so *.sharedo *.linkinfo $(OSTYPE)/*.[ao] $(OSTYPE)/*.debugo $(OSTYPE)/*.cudagdbo $(OSTYPE)/*.linkinfo *.bak core $(OSTYPE)/*.sharedo $(OSTYPE)/*.so
+
+Makefile:
+ touch .Source
+ touch .CHeader
+ touch .CCHeader
+
+install: all install-static install-shared install-ascii
+ @echo "Installation has completed: $(LIBNAME)"
+
+install-static: $(DSTDIR)/$(LIBNAME)
+install-shared: $(DSTDIR)/$(SHAREDLIB)
+
+install-debug: debug $(DSTDIR)/$(LIBNAMEDEBUG) install-ascii
+ @echo "Installation has completed: $(LIBNAMEDEBUG)"
+
+install-ascii: h hh wish ruby
+
+h:
+ @if [ -n "$(CHeader)" ] ; \
+ then\
+ echo "C Header Install" ; \
+ for file in $(CHeader) dummy ; \
+ do \
+ if [ -f $${file} ] ; \
+ then\
+ echo $${file}; $(INSTALL) -m 444 $${file} $(DSTDIR)/../../include ; \
+ fi;\
+ done; \
+ fi
+
+hh:
+ @if [ -n "$(CCHeader)" ] ; \
+ then \
+ echo "C++ Header Install" ; \
+ for file in $(CCHeader) dummy ; \
+ do \
+ if [ -f $${file} ] ; \
+ then\
+ echo $${file}; $(INSTALL) -m 444 $${file} $(DSTDIR)/../../include ; \
+ fi;\
+ done; \
+ fi
+
+wish:
+ @if [ -n "$(Wish)" ] ; \
+ then \
+ echo "Wish Install" ; \
+ for file in $(Wish) dummy ; \
+ do \
+ if [ -f $${file} ] ; \
+ then\
+ echo $${file}; $(INSTALL) -m 444 $${file} $(DSTDIR)/../../lib ; \
+ fi;\
+ done; \
+ fi
+
+ruby:
+ @if [ -n "$(Ruby)" ] ; \
+ then \
+ echo "Ruby Install" ; \
+ for file in $(Ruby) dummy ; \
+ do \
+ if [ -f $${file} ] ; \
+ then\
+ echo $${file}; $(INSTALL) -m 444 $${file} $(DSTDIR)/../../lib ; \
+ fi;\
+ done; \
+ fi
+
+put:
+ @Files=`ls -l | grep $${USER} | grep rw | grep -e "\.c" ` ;\
+ for file in $${Files} dummy; \
+ do \
+ if [ -w $${file} ] ; \
+ then\
+ echo $${file}; sccsPut $${file} ; \
+ fi;\
+ done
+
+$(DSTDIR)/$(LIBNAME): static-lib
+ @echo Installing lib: $(LIBNAME)
+ @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+ @cd $(OSTYPE); $(INSTALL) -m 444 $(LIBNAME) ../$(DSTDIR)
+ @echo LIBNAME:$(LIBNAME)
+ @echo Link EosObjects
+ @OBJLIST=`ls $(OSTYPE)/*.o `;\
+ echo $${OBJLIST} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+ echo $(REALOBJ) | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+ echo "#### Attention Uncompiled file ####";\
+ comm -13 .tmp1 .tmp2 ; \
+ echo "########";\
+ echo $(AR) r $(DSTDIR)/libEosObjects.a $${OBJLIST} ; \
+ $(AR) r $(DSTDIR)/libEosObjects.a $${OBJLIST}; \
+ echo $(AR) s $(DSTDIR)/libEosObjects.a ; \
+ $(AR) s $(DSTDIR)/libEosObjects.a \
+ chmod 660 $(DSTDIR)/libEosObjects.a
+ @rm .tmp1 .tmp2
+
+$(DSTDIR)/$(LIBNAMEDEBUG): debug
+ @echo Installing lib: $(LIBNAMEDEBUG)
+ @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+ @cd $(OSTYPE); $(INSTALL) -m 444 $(LIBNAMEDEBUG) ../$(DSTDIR)
+ @echo LIBNAME:$(LIBNAMEDEBUG)
+ @echo Link EosObjects
+ @OBJLISTDEBUG=`ls $(OSTYPE)/*.debugo `;\
+ echo $${OBJLISTDEBUG} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+ echo $(REALOBJDEBUG) | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+ echo "#### Attention Uncompiled file ####";\
+ comm -13 .tmp1 .tmp2 ; \
+ echo "########";\
+ echo $(AR) r $(DSTDIR)/libEosObjects.debug.a $${OBJLISTDEBUG} ; \
+ $(AR) r $(DSTDIR)/libEosObjects.debug.a $${OBJLISTDEBUG};
+ echo $(AR) s $(DSTDIR)/libEosObjects.debug.a ; \
+ $(AR) s $(DSTDIR)/libEosObjects.debug.a
+ chmod 660 $(DSTDIR)/libEosObjects.debug.a
+ @rm .tmp1 .tmp2
+
+$(DSTDIR)/$(SHAREDLIB): shared-lib
+ @echo Installing lib: $(SHAREDLIB)
+ @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+ @cd $(OSTYPE); $(INSTALL) -m 444 $(SHAREDLIB) ../$(DSTDIR)
+ @echo LIBNAME:$(SHAREDLIB)
+ @echo Link EosObjects
+ @OBJLIST=`ls $(OSTYPE)/*.sharedo `;\
+ echo $${OBJLIST} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+ echo $(REALSHAREDOBJ) | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+ echo "#### Attention Uncompiled file ####";\
+ comm -13 .tmp1 .tmp2 ; \
+ echo "########"; \
+ if [ ! -d $(DSTDIR)/shared ] ; then \
+ mkdir $(DSTDIR)/shared; \
+ fi; \
+ $(CP) $${OBJLIST} $(DSTDIR)/shared ; \
+ echo "$(CP) $${OBJLIST} $(DSTDIR)/shared" ; \
+ $(SHARED) $(DSTDIR)/libEosObjects.so $(DSTDIR)/shared/*.sharedo ; \
+ echo "$(SHARED) $(DSTDIR)/libEosObjects.so $(DSTDIR)/shared/*.sharedo" ; \
+ chmod 660 $(DSTDIR)/libEosObjects.so
+ @rm .tmp1 .tmp2
+
+install-all:
+ @cd .. ; $(MAKE) install
+
+install-ruby: ruby-lib
+ cd $(OSTYPE); $(RUBY) -r ftools -e 'File::install(ARGV[0], ARGV[1], 0555, true)' $(SHAREDLIB) $(RUBYSHAREDLIB)/$(SHAREDLIB)
+
+depend:
+ @echo dependency checking now
+ @echo $(OSTYPE)
+ @echo SRC = \\ > $(SOURCE)
+ @ls -1 *.c | sed -e "s/\.c/.c \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/\.cc/.cc \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/\.ccm/.ccm \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/\.idl/.idl \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/\.cu/.cu \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo OBJ = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/\.c/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/\.cc/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/\.ccm/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/\.idl/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/\.cu/.o \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo SHAREDOBJ = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/\.c/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/\.cc/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/\.ccm/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/\.idl/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/\.cu/.sharedo \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo REALOBJ = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.o \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @echo REALSHAREDOBJ = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.sharedo \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.sharedo \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @echo OBJDEBUG = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/\.c/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/\.cc/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/\.ccm/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/\.idl/.debugo \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo REALOBJDEBUG = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.ccm | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.debugo \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.debugo \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @echo OBJCUDAGDB = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/\.c/.cudagdb.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/\.cc/.cudagdb.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/\.cu/.cudagdb.o \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo REALOBJCUDAGDB = \\ >> $(SOURCE)
+ @ls -1 *.c | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.cudagdb.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cc | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.cudagdb.o \\\\/" >> $(SOURCE)
+ @ls -1 *.cu | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.cudagdb.o \\\\/" >> $(SOURCE)
+ @echo >> $(SOURCE)
+ @#
+ @echo >> $(SOURCE)
+ @echo CCHeader = \\ > .CCHeader
+ @ls -1 *.hh | sed -e "s/\.hh/.hh \\\\/" >> .CCHeader
+ @echo >> .CCHeader
+ @#
+ @echo CHeader = \\ > .CHeader
+ @ls -1 *.h | sed -e "s/\.h/.h \\\\/" >> .CHeader
+ @echo >> .CHeader
+ @#
+ @echo Wish = \\ > .Wish
+ @ls -1 *.wish | sed -e "s/\.wish/.wish \\\\/" >> .Wish
+ @echo >> .Wish
+ @#
+ @echo Ruby = \\ > .Ruby
+ @ls -1 *.rb | sed -e "s/\.rb/.rb \\\\/" >> .Ruby
+ @echo >> .Ruby
+ @#
+ @ls -1 *.c *.cc *.ccm | \
+ awk -vHostType=$(OSTYPE) -f$(EOS_HOME)/sbin/awk/objectdependency.awk > $(OSTYPE)/.Depend
+ @#
+ @$(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(KHOROS_INCS) *.c *.cc *.ccm >> $(OSTYPE)/.Depend
+ @for file in $(SRC) dummy ; \
+ do \
+ if [ -f $${file} ] ; \
+ then \
+ echo $${file} ; \
+ ln -sf ../$${file} $(OSTYPE)/$${file}; \
+ fi ;\
+ done
+
+#
+#
+#
+test::
+ @if [ -d test ] ; then \
+ cd test; \
+ $(MAKE); \
+ else \
+ echo "No test directory: making test"; \
+ mkdir test; \
+ cd test; \
+ touch Makefile; \
+ fi
+
+#
+# cvs
+#
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvslogin::
+ cvs -d $(EOS_CVSROOT) login
+
+cvscommit::
+ @echo "cvs -d $(EOS_CVSROOT) commit -m @"message@" filename"
+
+cvsadd::
+ @echo "cvs -d $(EOS_CVSROOT) add filename|dirname"
+ @echo "Need Commit for filename"
+ @echo "make cvscommit"
+
+cvsremove::
+ @echo "cvs -d $(EOS_CVSROOT) remove filename"
+ @echo "Need Commit for filename"
+ @echo "make cvscommit"
+
+include $(OSTYPE)/.Depend
+include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Objects/General/eosBayes/src/X86MAC64
\ No newline at end of file
--- /dev/null
+include ../Config/Define.inc
+include Config/Define.inc
+include .Source
+
+include Config/Target.inc
WORLDNAME=Tools
WORLDNAME=Tools
WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
mrcImage3DHighResoEmphasis \
mrcImage3DPad \
mrcImage3DPad2 \
+mrcImage3DPeakGet \
mrcImage3DSymmetryFind \
mrcImage3DWindowing \
mrcImageAbnormalValueRemove \
mrcImageRotation \
mrcImageRotation3D \
mrcImageSN \
+mrcImageSNEstimate \
mrcImageSamplingUnitChange \
mrcImageScalarAdd \
mrcImageSectionGet \
mrcImage3DHighResoEmphasis \
mrcImage3DPad \
mrcImage3DPad2 \
+mrcImage3DPeakGet \
mrcImage3DSymmetryFind \
mrcImage3DWindowing \
mrcImageAbnormalValueRemove \
mrcImageHoughTransformInverse \
mrcImageInfo \
mrcImageLabeling \
+mrcImageLocalMaximumValuesFind \
mrcImageLogicalOperation \
mrcImageLowPassFilter \
mrcImageMagnificationChange \
--- /dev/null
+OBJECTNAME = mrcImage3DPeakGet
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","Input:3D","Essential","1","1","In","inFile::mrcImage","NULL"
+"-I","-I[nformation]","Input:ROI Info","Optional","1","1","Info","inFile::ASCII","stdin"
+"-o","-o[utput]","Output:Positon","Optional","1","1","Out","outFile::ASCII","stdout"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImage3DPeakGet.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGE3DPEAKGET_H
+#define MRCIMAGE3DPEAKGET_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImage3DPeakGetInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagInfo;
+ char* Info;
+ FILE* fptInfo;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} mrcImage3DPeakGetInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImage3DPeakGetInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImage3DPeakGetInfo* info);
+extern void init1(mrcImage3DPeakGetInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGE3DPEAKGET_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImage3DPeakGet/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImage3DPeakGetInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("I") {
+ if(i+1<argc) {
+ info->Info = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagInfo++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImage3DPeakGetInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptInfo = stdin; info->flagInfo = 0;
+ info->fptOut = stdout; info->flagOut = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImage3DPeakGetInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(info->flagInfo) {
+ info->fptInfo = fileOpen(info->Info, "r");
+ }
+
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImage3DPeakGet/src/mrcImage3DPeakGet.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImage3DPeakGet",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImage3DPeakGet : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImage3DPeakGet
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+#include "lmrcImageROI2D.h"
+
+typedef struct lmrcImage3DPeakGetInfo {
+ lmrcImageROIsInfo roiInfo;
+} lmrcImage3DPeakGetInfo;
+
+/*
+typedef enum lmrcImage3DPeakGetMode {
+ a=0,
+ b=1
+} lmrcImage3DPeakGetMode;
+*/
+
+int
+main(int argc, char* argv[])
+{
+ mrcImage3DPeakGetInfo info;
+ lmrcImage3DPeakGetInfo linfo;
+ mrcImage in;
+ mrcImage* out;
+ int i;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+ mrcFileRead(&in, info.In, "in main", 0);
+ lmrcImageROIsInformationGet(info.fptInfo, &linfo.roiInfo);
+
+ out = (mrcImage*)memoryAllocate(sizeof(mrcImage)*linfo.numROI, "in main (out)");
+
+ for(i=0; i<llinfo.numROI; i++) {
+ }
+
+ for(i=0; i<linfo.numROI; i++) {
+ mrcFileWrite(&(out[i]), linfo.ROI[i].FileName, "main", 0);
+ }
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+}
+
+
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImage3DPeakGet
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImage3DPeakGet
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImage3DPeakGet/doc/mrcImage3DPeakGet.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:3D' i
+ -I 1 0 1 0 0 1 -1x1+1+3.000000 ' ' 'Info' 'Input:ROI Info' I
+ -O 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'Out' 'Output:Positon' o
+ -I 1 0 1 0 0 1 -1x1+1+6.000000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+7.500000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:3D\n");
+ fprintf(stderr, " [-I[nformation] Info (stdin ).as(inFile::ASCII ) ] :Optional :Input:ROI Info\n");
+ fprintf(stderr, " [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:Positon\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
# OptionControlFile
# FileFormat
-"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
-"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
-"-O","-O[utput]","Output WindowedFile","Optional","1","1","OutWin","outFile","NULL"
+"-i","-i[nput]","Input","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output","Essential","1","1","Out","outFile::mrcImage","NULL"
+"-oc","-o[utput]c[entre]","OutputDataFile","Optional","1","1","OutCentre","outFile::mrcImage","NULL"
+"-O","-O[utput]","Output WindowedFile","Optional","1","1","OutWin","outFile::mrcImage","NULL"
"-Wy","-W[indowing]y","Window Height: N.y * 1/Wy","Optional","1","1","Wy","Real","6"
"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
char* Out;
FILE* fptOut;
+ long flagOutCentre;
+ char* OutCentre;
+ FILE* fptOutCentre;
+
long flagOutWin;
char* OutWin;
FILE* fptOutWin;
}
SBREAK;
}
+ SCASE("oc") {
+ if(i+1<argc) {
+ info->OutCentre = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOutCentre++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
SCASE("O") {
if(i+1<argc) {
info->OutWin = stringGetNthWord(argv[i+1], 1, " ,");
{
info->fptIn = NULL; info->flagIn = 0;
info->fptOut = NULL; info->flagOut = 0;
+ info->fptOutCentre = NULL; info->flagOutCentre = 0;
info->fptOutWin = NULL; info->flagOutWin = 0;
info->Wy = 6; info->flagWy = 0;
info->fptconfigFile = NULL; info->flagconfigFile = 0;
info->fptOut = fileOpen(info->Out, "w");
}
+ if(info->flagOutCentre) {
+ info->fptOutCentre = fileOpen(info->OutCentre, "w");
+ }
+
if(info->flagOutWin) {
info->fptOutWin = fileOpen(info->OutWin, "w");
}
-R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageAutoCorrelationWithWindowing
-H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/doc/mrcImageAutoCorrelationWithWindowing.doc help
-Q 1 0 5.25x1+47+0 'Close'
- -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
- -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
- -O 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'OutWin' 'Output WindowedFile' O
- -f 1 0 1 0 0 -1x1+1+6.000000 0 0 6.000000 0 0 0 'Wy' 'Window Height: N.y * 1/Wy' Wy
- -I 1 0 1 0 0 1 -1x1+1+7.500000 ' ' 'configFile' 'ConfigurationFile' c
- -i 1 0 1 0 0 -1x1+1+9.000000 0 0 0 0 0 'mode' 'Mode' m
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output' o
+ -O 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'OutCentre' 'OutputDataFile' oc
+ -O 1 0 1 0 0 1 -1x1+1+6.000000 ' ' 'OutWin' 'Output WindowedFile' O
+ -f 1 0 1 0 0 -1x1+1+7.500000 0 0 6.000000 0 0 0 'Wy' 'Window Height: N.y * 1/Wy' Wy
+ -I 1 0 1 0 0 1 -1x1+1+9.000000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+10.500000 0 0 0 0 0 'mode' 'Mode' m
-E
-E
-E
--- /dev/null
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+include ../../../../../Config/Define.inc
+
+all: help exec
+
+DATA=data/TEM_filter_sample
+
+help:
+ @echo "----- Help Message Check -----"
+ @../$(OSTYPE)/$(OBJECTNAME) -h
+
+exec:
+ @echo "----- Execution Check -----"
+ ../$(OSTYPE)/$(OBJECTNAME) -i $(DATA).open -o $(DATA).auto -O $(DATA).win -Wy 1
+ @echo "----- Calc check -----"
+
+clean:
+
+init:
+ mrcImageBinalization -i $(DATA).mrc -o $(DATA).bin -t 240
+ mrcImageOpening -i $(DATA).bin -o $(DATA).open -times 2 -m 2 -r 1
--- /dev/null
+../../../../../..//data/mrcImageAutoCorrelationWithWindowing
\ No newline at end of file
{
fprintf(stderr, "Usage: %s\n", thisProgram);
fprintf(stderr, "Options:\n");
- fprintf(stderr, " [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile\n");
- fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile\n");
- fprintf(stderr, " [-O[utput] OutWin (NULL ).as(outFile ) ] :Optional :Output WindowedFile\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output\n");
+ fprintf(stderr, " [-o[utput]c[entre] OutCentre (NULL ).as(outFile::mrcImage ) ] :Optional :OutputDataFile\n");
+ fprintf(stderr, " [-O[utput] OutWin (NULL ).as(outFile::mrcImage ) ] :Optional :Output WindowedFile\n");
fprintf(stderr, " [-W[indowing]y Wy (6 ).as(Real ) ] :Optional :Window Height: N.y * 1/Wy\n");
fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
--- /dev/null
+OBJECTNAME = mrcImageSNEstimate
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageSNEstimate.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGESNESTIMATE_H
+#define MRCIMAGESNESTIMATE_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImageSNEstimateInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} mrcImageSNEstimateInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageSNEstimateInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageSNEstimateInfo* info);
+extern void init1(mrcImageSNEstimateInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGESNESTIMATE_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageSNEstimate/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageSNEstimateInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageSNEstimateInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = NULL; info->flagOut = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImageSNEstimateInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(!info->flagOut) {
+ stringGetFromFile(s, "Out", stdin, stdout, 0);
+ info->Out = stringGetNthWord(s, 1, " ,\t");
+ info->flagOut++;
+ }
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageSNEstimate/src/mrcImageSNEstimate.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageSNEstimate",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImageSNEstimate : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImageSNEstimate
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "Class.h"
+
+/*
+Example:
+typedef struct lmrcImageSNEstimateInfo {
+ float a;
+ int b;
+} lmrcImageSNEstimateInfo;
+
+typedef enum lmrcImageSNEstimateMode {
+ a=0,
+ b=1
+} lmrcImageSNEstimateMode;
+*/
+
+int
+main(int argc, char* argv[])
+{
+ mrcImageSNEstimateInfo info;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+}
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageSNEstimate
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageSNEstimate
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageSNEstimate/doc/mrcImageSNEstimate.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
+ -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
extern void lmrcImageShapeSearchCalc0(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchSylinder(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchDisk(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
-extern void lmrcImageShapeSearchSphere(double* data, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
+extern void lmrcImageShapeSearchSphere(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchModePrint(FILE* fpt);
int
Array U;
Array C;
Array Lambda;
- double L0, L1, L2;
+ double L0, L1, L2, L;
Array X;
Array Ave;
mrcImageParaTypeInteger nCube;
for(srcz=-nCube/2; srcz<nCube/2; srcz++) {
for(srcy=-nCube/2; srcy<nCube/2; srcy++) {
for(srcx=-nCube/2; srcx<nCube/2; srcx++) {
- //mrcPixelDataGet(in, x+srcx, y+srcy, z+srcz, &d, mrcPixelRePart, mrcPixelHowNearest);
- srcx0 = x + srcx;
- srcy0 = y + srcy;
- srcz0 = z + srcz;
- k = srcx0 + srcy0*in->HeaderN.x + srcz0*in->HeaderN.x*in->HeaderN.y;
+ mrcPixelDataGet(in, x+srcx, y+srcy, z+srcz, &d, mrcPixelRePart, mrcPixelHowNearest);
+ //srcx0 = x + srcx;
+ //srcy0 = y + srcy;
+ //srcz0 = z + srcz;
+ //k = srcx0 + srcy0*in->HeaderN.x + srcz0*in->HeaderN.x*in->HeaderN.y;
d = in->ImageFloatImage[k];
if(0<d) {
arrayDataSet2(X, 0, numPoint, srcx0);
L1 = arrayDataGet1(Lambda, 1);
L2 = arrayDataGet1(Lambda, 2);
+ L = L0+L1+L2;
+ L0 /= L;
+ L1 /= L;
+ L2 /= L;
+
switch(mode) {
case lmrcImageShapeSearchModeSylinder: {
- W = ((L1!=0)?(L0/L1):1)*(L2!=0?(L0/L2):1);
+ //W = ((L1!=0)?(L0/L1):1)*(L2!=0?(L0/L2):1);
+ W = 1.0/(SQR(1-L0)+SQR(L1)+SQR(L2));
#ifdef DEBUG
if(4000<W) {
DEBUGPRINT3("%f %f %f\n", x, y, z);
scoreNeg += d;
countNeg++;
}
-
- }
}
+
k0 = (int)(linfo->x+0.5) + (int)(linfo->y+0.5)*in->HeaderN.x + (int)(linfo->z+0.5)*in->HeaderN.x*in->HeaderN.y;
*data = (0.8*scorePos/countPos - 0.2*scoreNeg/countNeg);
}
"-w","-w[eight]","weight","Optional","1","1","Weight","Real","1.0"
"-sig","-sig[ma]","Sigma[A]:Atom radius","Optional","1","1","Sigma","Real","0.0"
"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-cuda","-cuda","UseCuda","Optional","1","1","cudaDeviceID","Integer","0"
"-m","-m[ode]","Mode: 0 Merc; 1: Earth","Optional","1","1","mode","Integer","0"
char* configFile;
FILE* fptconfigFile;
+ long flagcudaDeviceID;
+ long cudaDeviceID;
+
long flagmode;
long mode;
}
SBREAK;
}
+ SCASE("cuda") {
+ if(i+1<argc) {
+ info->cudaDeviceID = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagcudaDeviceID++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
SCASE("m") {
if(i+1<argc) {
info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
info->Weight = 1.0; info->flagWeight = 0;
info->Sigma = 0.0; info->flagSigma = 0;
info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->cudaDeviceID = 0; info->flagcudaDeviceID = 0;
info->mode = 0; info->flagmode = 0;
}
info->fptconfigFile = fileOpen(info->configFile, "r");
}
+ if(info->flagcudaDeviceID) {
+ }
+
if(info->flagmode) {
}
#include <stdlib.h>
#include <string.h>
#include <math.h>
-#undef DEBUG
+#define DEBUG
#include "mrcImage.h"
#include "../inc/config.h"
#include "pdbFile.h"
#include "Matrix3D.h"
#include "Map2D.h"
+#ifdef CUDA
+#include "eosCuda.h"
+#endif
+
#define HowToCreateImageBit (0x1)
#define HowToDrawMapBit (0x2)
init0(&info);
argCheck(&info, argc, argv);
init1(&info);
-
+
+#ifdef CUDA
+ if(info.flagcudaDeviceID) {
+ eosCudaInit(info.cudaDeviceID);
+ }
+#endif
+
linfo.dx = info.dx; linfo.dy = info.dy;
linfo.nx = info.nx; linfo.ny = info.ny;
roty = ((double)iy)/info.rotny*2.0*M_PI;
pdbRotationFollowingEulerAngle(&pdb, info.RotMode, -roty, rotx, -rotz);
}
+
+ DEBUGPRINT3("rot: (%g %g %g) \n", rotx*DEGREE, roty*DEGREE, rotz*DEGREE);
lpdb2mrc2d(&mrc, &pdb, &linfo, 'z', 0);
+
if(!info.flagRotMode) {
pdbRotationYXZ(&pdb, -rotx, roty, rotz);
} else {
map2DCoordGet(&(to.x), &(to.y), roty, rotx, info.rotnx, info.rotny, ((info.mode&HowToDrawMapBit)>>1));
to.x = fmod(to.x*info.nx, out.HeaderN.x);
to.y = fmod(to.y*info.ny, out.HeaderN.y);
+ DEBUGPRINT2("map %f %f\n", to.x, to.y);
to.z = 0.0;
lmrcImageCopy(&out, &mrc, to);
}
-/bin/bash: pdb2mrc2d: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>pdb2mrc2d</TITLE>
+</HEAD>
+<BODY>
+<H1>pdb2mrc2d</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: pdb2mrc2d
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Optional :OutputDataFile(2D)
+ [-O[utput] Out3D (NULL ).as(outFile ) ] :Optional :OutputDataFile(3D)
+ [-d[elta] dx (5.0 ).as(Real )
+ dy (5.0 ).as(Real ) ] :Essential :delta: dx[A] dy[A]
+ [-s[tart] sx (0.0 ).as(Real )
+ sy (0.0 ).as(Real ) ] :Optional :start: startx[A] starty[A]: When -s was not set, image centre is the origin(0,0,0)
+ [-n[umber] nx (0 ).as(Integer )
+ ny (0 ).as(Integer ) ] :Essential :N: nx ny (image size)
+ [-Rot[ation] rotnx (1 ).as(Integer )
+ rotny (1 ).as(Integer ) ] :Optional :rotnx rotny
+ [-S[tart] srotx (0.0 ).as(Real )
+ sroty (0.0 ).as(Real )
+ srotz (0.0 ).as(Real ) ] :Optional :start(rotx roty rotz):ZXY
+ [-startE[uler]A[ngle]sRotMode (YOYS ).as(String )
+ sRot1 (0.0 ).as(Real )
+ sRot2 (0.0 ).as(Real )
+ sRot3 (0.0 ).as(Real ) ] :Optional :EulerAngle: Start Angle
+ [-E[uler]A[ngle]Mode RotMode (YOYS ).as(String ) ] :Optional :RotationMode
+ [-E[uler]A[ngle]Rot1 dRot1 (5.0 ).as(Real )
+ minRot1 (0.0 ).as(Real )
+ maxRot1 (180.0 ).as(Real ) ] :Optional :FirstRotation
+ [-E[uler]A[ngle]Rot2 dRot2 (5.0 ).as(Real )
+ minRot2 (0.0 ).as(Real )
+ maxRot2 (180.0 ).as(Real ) ] :Optional :SecondRotation
+ [-w[eight] Weight (1.0 ).as(Real ) ] :Optional :weight
+ [-sig[ma] Sigma (0.0 ).as(Real ) ] :Optional :Sigma[A]:Atom radius
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode: 0 Merc; 1: Earth
+----- Attention1 -----
+If both of -s and -startEA, first -s and second -startEA will be performed
+----- Attention2 -----
+Bug fixed: rotation around x-axis. + is changed to -
+----- Mode -----
+1: 0: equal angle 1: equal area
+2: 0: Mercatol 1: Morwide
+</PRE>
+</BODY>
+</HTML>
-f 1 0 1 0 0 -1x1+1+19.500000 0 0 1.000000 0 0 0 'Weight' 'weight' w
-f 1 0 1 0 0 -1x1+1+21.000000 0 0 0.000000 0 0 0 'Sigma' 'Sigma[A]:Atom radius' sig
-I 1 0 1 0 0 1 -1x1+1+22.500000 ' ' 'configFile' 'ConfigurationFile' c
- -i 1 0 1 0 0 -1x1+1+24.000000 0 0 0 0 0 'mode' 'Mode: 0 Merc; 1: Earth' m
+ -i 1 0 1 0 0 -1x1+1+24.000000 0 0 0 0 0 'cudaDeviceID' 'UseCuda' cuda
+ -i 1 0 1 0 0 -1x1+1+25.500000 0 0 0 0 0 'mode' 'Mode: 0 Merc; 1: Earth' m
-E
-E
-E
../$(OSTYPE)/$(OBJECTNAME) -i data/121p.shift.pdb -o data/121p.mrc2d -O data/121p.mrc2dStack -s -30 -30 -n 13 13 -d 5 5 -Rot 8 8 -m 3 -sig 3
@echo "----- Calc check -----"
+exec2:
+ @echo "----- Execution Check -----"
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/121p.shift.pdb -o data/121p.mrc2d2 -O data/121p.mrc2dStack2 -s -32 -32 -n 32 32 -d 2 2 -Rot 12 12 -m 1 -sig 3
+ @echo "----- Calc check -----"
+
clean:
fprintf(stderr, " [-w[eight] Weight (1.0 ).as(Real ) ] :Optional :weight\n");
fprintf(stderr, " [-sig[ma] Sigma (0.0 ).as(Real ) ] :Optional :Sigma[A]:Atom radius\n");
fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-cuda cudaDeviceID (0 ).as(Integer ) ] :Optional :UseCuda\n");
fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode: 0 Merc; 1: Earth\n");
additionalUsage();
}