set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
mrcImage areaBlack;
mrcImage labelWhite;
mrcImage labelBlack;
- mrcImage reversal;
+ mrcImage ToneReverse;
} lmrcImageHoleFillingInfo;
typedef struct lmrcImageRadialDistributionInfo {
float Cx;
float Cy;
+ float Cz;
int flagAverage;
int flagAzimuth;
int NAzimuth;
<H2>Information from source codes</H2>
</A>
<PRE>
-../src/fftn.c:
-
-../src/lmrcFETnormalizeBySD.c:
-
-../src/lmrcFFTCentralSection.c:
-
-../src/lmrcFFTCentralSectionCompare.c:
-
-../src/lmrcFFTCentralSectionCompareInfoWrite.c:
-
-../src/lmrcFFTCentralSectionsGet.c:
-
-../src/lmrcFFTExpression.c:
-
-../src/lmrcFFTFGconj.c:
-
-../src/lmrcFFTFxG.c:
-
-../src/lmrcFFTInfo.c:
-
-../src/lmrcImage3DPad.c:
-
-../src/lmrcImage3DWindowing.c:
-
-../src/lmrcImageAddValue.c:
-
-../src/lmrcImageAsProbability.c:
-
-../src/lmrcImageAverage.c:
-
-../src/lmrcImageBandPassFilter.c:
-
-../src/lmrcImageBilateralFilter.c:
-
-../src/lmrcImageBinarization.c:
-
-../src/lmrcImageBottomHatTransform.c:
-
-../src/lmrcImageBoundaryInfo.c:
-
-../src/lmrcImageCTFCompensation.c:
-
-../src/lmrcImageCTFDetermination.c:
-
-../src/lmrcImageCTFObservation.c:
-
-../src/lmrcImageCTFSN.c:
-
-../src/lmrcImageCVE.c:
-
-../src/lmrcImageCalcArea.c:
-
-../src/lmrcImageCenterGet.c:
-
-../src/lmrcImageCentre.c:
-
-../src/lmrcImageClosing.c:
-
-../src/lmrcImageClusterAnalysis.c:
-
-../src/lmrcImageCommonLine.c:
-
-../src/lmrcImageConnection.c:
-
-../src/lmrcImageConnectivityNumberCalc.c:
-
-../src/lmrcImageContourSurface.c:
-
-../src/lmrcImageContraction.c:
-
-../src/lmrcImageCorrelation.c:
- $lmrcImageEuclidDistanceCalc: Calculate Euclid distance between two images $
- $arg: in1: input mrcImage1 $
- $arg: in2: input mrcImage2 $
- $arg: mode: input int $
- $mode: 0 Sum of SQR $
- $mode: 1 Distance $
- $return: EuclidDistance $
-
-../src/lmrcImageCorrelationPVM.c:
-
-../src/lmrcImageCorrelationWithCTFCompensation.c:
-
-../src/lmrcImageCorrelationinSpace.c:
-
-../src/lmrcImageCrystalCreate.c:
-
-../src/lmrcImageDataMaxAndMinGetByImage.c:
-
-../src/lmrcImageDataStraightCopy.c:
-
-../src/lmrcImageDeconvolution.c:
-
-../src/lmrcImageDensity.c:
-
-../src/lmrcImageDensityInverse.c:
-
-../src/lmrcImageDensityNormalizationByImage.c:
-
-../src/lmrcImageDifferential.c:
-
-../src/lmrcImageDilation.c:
-
-../src/lmrcImageDistanceConversion.c:
-
-../src/lmrcImageEdge.c:
-
-../src/lmrcImageEdgeAverage.c:
-
-../src/lmrcImageEdgeEnhancement.c:
-
-../src/lmrcImageErosion.c:
-
-../src/lmrcImageFFT.c:
-
-../src/lmrcImageFOMCalc.c:
-
-../src/lmrcImageFeatureCalc.c:
-
-../src/lmrcImageFeatureExtraction.c:
-
-../src/lmrcImageFeatureExtractionCoOccurrence.c:
-
-../src/lmrcImageFeatureExtractionRunLength.c:
-
-../src/lmrcImageFilterCreate.c:
-
-../src/lmrcImageFirstNoiseReductionByRelaxation.c:
-
-../src/lmrcImageFloating.c:
-
-../src/lmrcImageFourierNeighborCorrelation.c:
-
-../src/lmrcImageFourierPowerSpectrum.c:
-
-../src/lmrcImageFourierShellCorrelation.c:
-
-../src/lmrcImageHighPassFilter.c:
-
-../src/lmrcImageHighlighting.c:
-
-../src/lmrcImageHoughTransform.c:
-
-../src/lmrcImageLabeling.c:
-
-../src/lmrcImageLocalMaximumValuesFind.c:
-
-../src/lmrcImageLogicalOperation.c:
-
-../src/lmrcImageLowPassFilter.c:
-
-../src/lmrcImageMasking.c:
-
-../src/lmrcImageMaxDataGet.c:
-
-../src/lmrcImageMirroring.c:
- $lmrcImageMirroring: (mrcImage* out, mrcImage* in, lmrcImageMirroring mode) $
-
-../src/lmrcImageModeChange.c:
-
-../src/lmrcImageModelCreate.c:
-
-../src/lmrcImageMontageCreate.c:
-
-../src/lmrcImageMorphology.c:
-
-../src/lmrcImageMove.c:
-
-../src/lmrcImageMultiCTFCompensation.c:
-
-../src/lmrcImageMultiplying.c:
-
-../src/lmrcImageNegativeLaplacian.c:
-
-../src/lmrcImageNoiseCreate.c:
-
-../src/lmrcImageNormalizing.c:
-
-../src/lmrcImageOneLineSimilarityCalc.c:
-
-../src/lmrcImageOpening.c:
-
-../src/lmrcImagePad.c:
-
-../src/lmrcImagePartImageSegmentation.c:
-
-../src/lmrcImagePattersonFunctionCalc.c:
-
-../src/lmrcImagePixelSummationOfProbabilityGetByImage.c:
-
-../src/lmrcImagePosterization.c:
-
-../src/lmrcImagePrewitt.c:
-
-../src/lmrcImageProjection.c:
-
-../src/lmrcImageProportionalDensityLevelSetByImage.c:
-
-../src/lmrcImageROI2D.c:
-
-../src/lmrcImageROI3D.c:
-
-../src/lmrcImageROInotChangeHeaderLength.c:
-
-../src/lmrcImageRadialDistribution.c:
-
-../src/lmrcImageRhoFiltering.c:
-
-../src/lmrcImageRoberts.c:
-
-../src/lmrcImageRotation.c:
-
-../src/lmrcImageSSDA.c:
-
-../src/lmrcImageSamplingUnitChange.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxation.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c:
-
-../src/lmrcImageShapePCA.c:
-
-../src/lmrcImageShift.c:
-
-../src/lmrcImageShrink.c:
-
-../src/lmrcImageSigmaCalculate.c:
-
-../src/lmrcImageSinogram.c:
-
-../src/lmrcImageSinogramCorrelation.c:
-
-../src/lmrcImageSinogramFFT.c:
-
-../src/lmrcImageSmoothing.c:
-
-../src/lmrcImageSobel.c:
-
-../src/lmrcImageSolventFlattening.c:
-
-../src/lmrcImageSpatialFrequencyFilter.c:
-
-../src/lmrcImageSphere.c:
-
-../src/lmrcImageSplit.c:
-
-../src/lmrcImageStack.c:
-
-../src/lmrcImageStudentCalculate.c:
-
-../src/lmrcImageSubtractionCalc.c:
-
-../src/lmrcImageSummationCalculate.c:
-
-../src/lmrcImageSurfaceAreaCalc.c:
-
-../src/lmrcImageSymmetryFind.c:
-
-../src/lmrcImageTfunction.c:
-
-../src/lmrcImageToneReversal.c:
-
-../src/lmrcImageTopHatTransform.c:
-
-../src/lmrcImageTrans.c:
-
-../src/lmrcImageTransformDescartesIntoPolar.c:
-
-../src/lmrcImageTranspose.c:
-
-../src/lmrcImageTriming.c:
-
-../src/lmrcImageUnsharpening.c:
-
-../src/lmrcImageVolumeCalc.c:
-
-../src/lmrcImageWindowing.c:
-
-../src/lmrcImagesFTest.c:
-
-../src/lmrcImagesStatDataGet.c:
-
-../src/lmrcImagesTTest.c:
-
-../src/lmrcImagesVarianceAnalysis.c:
-
-../src/lmrcImagesVarianceMap.c:
-
-../src/lmrcMultiFFTCentralSectionsCompare.c:
-
-../src/lmrcSinogramFET.c:
-
-../src/lmrcSinogramFETPCA.c:
-
-../src/lmrcSinogramFETcalcWeight.c:
-
-../src/lmrcSinogramFETcorrelationMap.c:
-
-../src/lmrcSinogramFETnormalizedMap.c:
-
-../src/lmrcSinogramFETreferredCorrelation.c:
-
-../src/lmrcSinogramFETsmoothParameterMatching.c:
-
-../src/mrcImageCheckFFT.c:
-
-../src/mrcImageCheckSameSize.c:
-
-../src/mrcImageCopy.c:
-
-../src/mrcImageDataSet.c:
-
-../src/mrcImageError.c:
-
-../src/mrcImageGet.c:
-
-../src/mrcImageGetPixels.c:
-
-../src/mrcImageInfo.c:
-
-../src/mrcImageInit.c:
-
-../src/mrcImageOperation.c:
-
-../src/mrcImagePVM.c:
-
-../src/mrcImagePrint.c:
-
-../src/mrcImageRead.c:
-
-../src/mrcImageSectionGet.c:
-
-../src/mrcImageSectionSet.c:
-
-../src/mrcImageSet.c:
-
-../src/mrcImageTailer.c:
-
-../src/mrcImageToIntImage.c:
-
-../src/mrcImageUtil.c:
-
-../src/mrcImageUtilityforVariance.c:
-
-../src/mrcImageWrite.c:
-
-../src/mrcImageWrite2.c:
-
-../src/mrcImagefuncmin.c:
-
-../src/mrcRefUtil.c:
</PRE>
<HR>
<A NAME="include">
mrcImage areaBlack;
mrcImage labelWhite;
mrcImage labelBlack;
- mrcImage reversal;
+ mrcImage ToneReverse;
} lmrcImageHoleFillingInfo;
dst->data[i] = 0;
count.data[i] = 0;
}
+ for(z=0; z<mrc->HeaderN.z; z++) {
+ for(y=linfo->Cy - size; y<linfo->Cy + size; y++) {
for(x=linfo->Cx - size; x<linfo->Cx + size; x++) {
- for(y=linfo->Cy - size; y<linfo->Cy + size; y++) {
- for(z=0; z<mrc->HeaderN.z; z++) {
- length = sqrt(SQR(x-linfo->Cx)+SQR(y-linfo->Cy));
- ilength = floor(length+0.5);
- if(ilength<size) {
- mrcPixelDataGet(mrc, x, y, 0.0, &data, mrcPixelRePart, mrcPixelHowNearest);
- dst->data[ilength] += data;
- count.data[ilength] += 1;;
- }
- }
+ length = sqrt(SQR(x-linfo->Cx)+SQR(y-linfo->Cy));
+ ilength = floor(length+0.5);
+ if(ilength<size) {
+ mrcPixelDataGet(mrc, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ dst->data[ilength] += data;
+ count.data[ilength] += 1;;
}
}
+ }
+ }
+ if(linfo->flagAverage) {
+ DEBUGPRINT("Averaging\n");
+ for(i=0; i<size; i++) {
+ DEBUGPRINT2("%f: %f\n", dst->data[i], count.data[i]);
+ dst->data[i] = dst->data[i]/count.data[i];
+ }
+ } else {
+ DEBUGPRINT("Integral\n");
+ for(i=0; i<size; i++) {
+ DEBUGPRINT2("%f: %f\n", dst->data[i], count.data[i]);
+ dst->data[i] = dst->data[i]/count.data[i]*radius*i;
+ }
+ }
+
+ return *dst;
+}
+
+floatVector
+lmrcImageRadialDistributionSphericalCoordinates(
+ floatVector* dst,
+ mrcImage* mrc,
+ lmrcImageRadialDistributionInfo* linfo)
+{
+ int sx, sy, sz, size;
+ float x, y, z;
+ float length;
+ float radius;
+ int i, ilength;
+ floatVector count;
+ double data;
+
+ sx = MIN(mrc->HeaderN.x - 1 - linfo->Cx, linfo->Cx);
+ sy = MIN(mrc->HeaderN.y - 1 - linfo->Cy, linfo->Cy);
+ sz = MIN(mrc->HeaderN.z - 1 - linfo->Cz, linfo->Cz);
+ size = MIN(sx, MIN(sy, sz)) + 1;
+ DEBUGPRINT4("Size(%d %d %d) -> %d\n", sx, sy, sz, size);
+ radius = mrc->HeaderLength.x;
+
+ dst->size = size;
+ floatVectorInit(dst, size);
+ count.size = size;
+ floatVectorInit(&count, size);
+
+ for(i=0; i<size; i++) {
+ dst->data[i] = 0;
+ count.data[i] = 0;
+ }
+ for(z=linfo->Cz - size; z<linfo->Cz + size; z++) {
+ for(y=linfo->Cy - size; y<linfo->Cy + size; y++) {
+ for(x=linfo->Cx - size; x<linfo->Cx + size; x++) {
+ length = sqrt(SQR(x-linfo->Cx)+SQR(y-linfo->Cy)+SQR(z-linfo->Cz));
+ ilength = floor(length+0.5);
+ if(ilength<size) {
+ mrcPixelDataGet(mrc, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ dst->data[ilength] += data;
+ count.data[ilength] += 1;;
+ }
+ }
+ }
+ }
if(linfo->flagAverage) {
DEBUGPRINT("Averaging\n");
for(i=0; i<size; i++) {
typedef struct lmrcImageRadialDistributionInfo {
float Cx;
float Cy;
+ float Cz;
int flagAverage;
int flagAzimuth;
int NAzimuth;
WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
lmrc2pngInfo linfo;
mrcImage mrc;
pngFile png;
+ int z;
+ char s[1024];
+
init0(&info);
argCheck(&info, argc, argv);
init1(&info);
DEBUGPRINT("Program Start\n");
mrcFileRead(&mrc, info.In, "in main", 0);
- lmrc2png(&png, &mrc, &linfo, info.mode);
- pngFileWrite(&png, info.Out, 0);
+
+ if(mrc->HeaderN.z<=1) {
+ lmrc2png(&png, &mrc, &linfo, info.mode);
+ pngFileWrite(&png, info.Out, 0);
+ } else {
+ for(z=0; z<mrc->HeaderN.z; z++) {
+ sprintf(s, info.Format, z);
+ linfo.z = z;
+ lmrc2png(&png, &mrc, &linfo, info.mode);
+ pngFileWrite(&png, s, 0);
+ }
+ }
exit(EXIT_SUCCESS);
}
"-o","-o[utput]","Output: ASCII","Optional","1","1","Out","outFile","stdout"
"-O","-O[utputMRC]","Output: MRC","Optional","1","1","Out2","outFile","NULL"
"-centre","-centre","[pixel]","Optional","2","1","Cx","Real","0.0","2","Cy","Real","0.0"
+"-Cs","-Cs[phere]","[pixel]","Optional","3","1","Csx","Real","0.0","2","Csy","Real","0.0","3","Csz","Real","0.0"
"-Avg","-Avg","flagAvg: Averaged Intensity","Optional","0"
"-Inv","-Inv","flagInv: Inversed Intensity","Optional","0"
"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
long flagCy;
float Cy;
+ long flagCsx;
+ float Csx;
+
+ long flagCsy;
+ float Csy;
+
+ long flagCsz;
+ float Csz;
+
long Avg;
long Inv;
}
SBREAK;
}
+ SCASE("Cs") {
+ if(i+3<argc) {
+ info->Csx = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagCsx++;
+ info->Csy = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagCsy++;
+ info->Csz = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagCsz++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
SCASE("Avg") {
if(i+0<argc) {
info->Avg++;
info->fptOut2 = NULL; info->flagOut2 = 0;
info->Cx = 0.0; info->flagCx = 0;
info->Cy = 0.0; info->flagCy = 0;
+ info->Csx = 0.0; info->flagCsx = 0;
+ info->Csy = 0.0; info->flagCsy = 0;
+ info->Csz = 0.0; info->flagCsz = 0;
info->Avg=0;
info->Inv=0;
info->fptconfigFile = NULL; info->flagconfigFile = 0;
if(info->flagCy) {
}
+ if(info->flagCsx) {
+ }
+
+ if(info->flagCsy) {
+ }
+
+ if(info->flagCsz) {
+ }
+
if(info->flagconfigFile) {
info->fptconfigFile = fileOpen(info->configFile, "r");
}
if(info.flagCx) {
linfo.Cx = info.Cx;
linfo.Cy = info.Cy;
+ } else if(info.flagCsx) {
+ linfo.Cx = info.Csx;
+ linfo.Cy = info.Csy;
+ linfo.Cz = info.Csz;
} else {
centre = lmrcImageDensityInfoCentreOfGravity(&mrc, 0);
linfo.Cx = centre.x;
linfo.Cy = centre.y;
+ linfo.Cz = centre.z;
}
linfo.flagAverage = info.Avg;
- lmrcImageRadialDistribution(&dst, &mrc, &linfo);
-
+ switch(info.mode) {
+ case 0: {
+ lmrcImageRadialDistribution(&dst, &mrc, &linfo);
+ break;
+ }
+ case 1: {
+ lmrcImageRadialDistributionSphericalCoordinates(&dst, &mrc, &linfo);
+ break;
+ }
+ default: {
+ fprintf(stderr, "Not supported mode: %d\n", info.mode);
+ exit(EXIT_FAILURE);
+ }
+ }
DEBUGPRINT1("Size: %d\n", dst.size);
for(i=0; i<dst.size; i++) {
fprintf(info.fptOut, "%f\n", dst.data[i]);
additionalUsage()
{
fprintf(stderr, "----- Additional Usage -----\n");
+ fprintf(stderr, ">> Mode \n");
+ fprintf(stderr, " 0: 2D or 3D(Cylindrical Coordinates)\n");
+ fprintf(stderr, " 1: 2D or 3D(Spherical Coordinates)\n");
}
[-O[utputMRC] Out2 (NULL ).as(outFile ) ] :Optional :Output: MRC
[-centre Cx (0.0 ).as(Real )
Cy (0.0 ).as(Real ) ] :Optional :[pixel]
+ [-Cs[phere] Csx (0.0 ).as(Real )
+ Csy (0.0 ).as(Real )
+ Csz (0.0 ).as(Real ) ] :Optional :[pixel]
[-Avg ] :Optional :flagAvg: Averaged Intensity
[-Inv ] :Optional :flagInv: Inversed Intensity
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
+>> Mode
+ 0: 2D or 3D(Cylindrical Coordinates)
+ 1: 2D or 3D(Spherical Coordinates)
</PRE>
</BODY>
</HTML>
-O 1 0 1 0 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output: ASCII' o
-O 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'Out2' 'Output: MRC' O
-I 1 0 0 1 0 1 -1x1+1+6 ' ' '0.0' 'Cx' [pixel]
- -t 1 0 1 0 0 6x1+1+7 'Avg' 'flagAvg: Averaged Intensity' Avg
- -t 1 0 1 0 0 6x1+1+9 'Inv' 'flagInv: Inversed Intensity' Inv
- -I 1 0 1 0 0 1 -1x1+1+10.500000 ' ' 'configFile' 'ConfigurationFile' c
- -i 1 0 1 0 0 -1x1+1+12.000000 0 0 0 0 0 'mode' 'Mode' m
+ -I 1 0 0 1 0 1 -1x1+1+7 ' ' '0.0' 'Csx' [pixel]
+ -t 1 0 1 0 0 6x1+1+9 'Avg' 'flagAvg: Averaged Intensity' Avg
+ -t 1 0 1 0 0 6x1+1+10 'Inv' 'flagInv: Inversed Intensity' Inv
+ -I 1 0 1 0 0 1 -1x1+1+12.000000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+13.500000 0 0 0 0 0 'mode' 'Mode' m
-E
-E
-E
--- /dev/null
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+include ../../../../../Config/Define.inc
+
+all: help exec
+
+help:
+ @echo "----- Help Message Check -----"
+ @../$(OSTYPE)/$(OBJECTNAME) -h
+
+exec:
+ @echo "----- Execution Check -----"
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/121p-centre.mrc -o data/121p-centre.radial.Cyl -centre 49 49 -m 0 -Avg
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/121p-centre.mrc -o data/121p-centre.radial.Sph -Cs 49 49 49 -m 1 -Avg
+ @echo "----- Calc check -----"
+
+clean:
--- /dev/null
+../../../../../..//data/mrcImageRadialDistribution
\ No newline at end of file
fprintf(stderr, " [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output: ASCII\n");
fprintf(stderr, " [-O[utputMRC] Out2 (NULL ).as(outFile ) ] :Optional :Output: MRC\n");
fprintf(stderr, " [-centre Cx (0.0 ).as(Real ) \n Cy (0.0 ).as(Real ) ] :Optional :[pixel]\n");
+ fprintf(stderr, " [-Cs[phere] Csx (0.0 ).as(Real ) \n Csy (0.0 ).as(Real ) \n Csz (0.0 ).as(Real ) ] :Optional :[pixel]\n");
fprintf(stderr, " [-Avg ] :Optional :flagAvg: Averaged Intensity\n");
fprintf(stderr, " [-Inv ] :Optional :flagInv: Inversed Intensity\n");
fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");