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eos/hostdependX86LINUX64.git
9 years agoRebuild:
Takuo Yasunaga [Sun, 4 Jan 2015 09:53:17 +0000 (18:53 +0900)]
Rebuild:

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Tue, 30 Dec 2014 04:56:28 +0000 (13:56 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
src/Tools/mrcImage/mrcImageHoughTransform/src/mrcImageHoughTransform.html

9 years agoMerged:
Takuo Yasunaga [Tue, 30 Dec 2014 04:48:52 +0000 (13:48 +0900)]
Merged:

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Tue, 30 Dec 2014 01:20:41 +0000 (10:20 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
bin/wish/Display2/tclIndex
src/Tools/Integration/Display2/src/Display2.html
src/Tools/Makefile

9 years agoRebuild and merge:
Takuo Yasunaga [Mon, 29 Dec 2014 05:03:23 +0000 (14:03 +0900)]
Rebuild and merge:

9 years agoRebuild:
Takuo Yasunaga [Mon, 22 Dec 2014 09:30:34 +0000 (18:30 +0900)]
Rebuild:

9 years agoNew tool: mrcImageHoughTransform, mrcImageHoughTransformInverse, mrcImageToneReversal
Takuo Yasunaga [Sun, 21 Dec 2014 17:31:08 +0000 (02:31 +0900)]
New tool: mrcImageHoughTransform, mrcImageHoughTransformInverse, mrcImageToneReversal

Rebuild:

9 years agoAfter merge
himatani_cafe [Tue, 9 Dec 2014 15:56:27 +0000 (00:56 +0900)]
After merge

9 years ago32bits to 64bts
Takuo Yasunaga [Sun, 30 Nov 2014 05:09:16 +0000 (14:09 +0900)]
32bits to 64bts
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/
modified:   src/Objects/DataManip/mrcImage/src/mrcImageInit.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageRead.c
modified:   src/Tools/Config/Define.inc

Ruby related:
new file:   hostdepend/X86LINUX64/util/X86LINUX64/bin/bundle
modified:   hostdepend/X86LINUX64/util/X86LINUX64/bin/gem
modified:   src/Objects/DataManip/mrcImage/src/mrcImageInit.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageRead.c
modified:   src/Tools/Config/Define.inc

9 years agoto CUDA static libraries:
Takuo Yasunaga [Fri, 21 Nov 2014 21:50:17 +0000 (06:50 +0900)]
to CUDA static libraries:

modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFFT
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageShrink.sharedo
modified:   hostdepend/X86LINUX64/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageShrink.sharedo
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64/mrcImageFFT
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64/mrcImageShrink
modified:   hostdepend/X86LINUX64/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64/pdbRotation
new file:   hostdepend/X86LINUX64/src/Tools/pdbUtil/pdbTrans/src/X86LINUX64/pdbTrans
modified:   src/Config/x86Linux64.inc
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageShrink.c
modified:   src/Tools/mrcImage/mrcImageFFT/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageShrink/src/test/data
modified:   src/Tools/pdbUtil/pdbRotation/Config/Define.inc
modified:   src/Tools/pdbUtil/pdbTrans/Config/Define.inc
new file:   src/Tools/pdbUtil/pdbTrans/src/test/data

9 years agoRebuld:
Takuo Yasunaga [Sat, 1 Nov 2014 07:40:20 +0000 (16:40 +0900)]
Rebuld:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageAutoCorrelationWithWindowing
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageCTFCompensationForTiltImage
copied:     hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/mrcImageNormalizedSubtraction -> hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageNormalizedSubtraction
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageSpatialFrequencyFilter
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libArray.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libTclTk.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libctfInfo.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libgifFile.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libllData.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libpdbFile.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libtransform.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageSpatialFrequencyFilter.sharedo
modified:   hostdepend/X86LINUX64/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a
modified:   hostdepend/X86LINUX64/src/Objects/DataExpress/gifFile/src/X86LINUX64/libgifFile.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/ctfInfo/src/X86LINUX64/libctfInfo.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/llData/src/X86LINUX64/libllData.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageSpatialFrequencyFilter.sharedo
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/pdbFile/src/X86LINUX64/libpdbFile.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/transform/src/X86LINUX64/libtransform.a
modified:   hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/libArray.a
new file:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64/mrcImageAutoCorrelationWithWindowing
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64/mrcImageCTFCompensationForTiltImage
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/mrcImageNormalizedSubtraction
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/X86LINUX64/mrcImageSpatialFrequencyFilter
modified:   src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified:   src/Tools/Integration/Display2/src/Display2.html
modified:   src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/mrcImageAutoCorrelationWithWindowing.html
modified:   src/Tools/mrcImage/mrcImageDensityInfo/src/mrcImageDensityInfo.html
typechange: src/Tools/mrcImage/mrcImageNormalizedSubtraction/Makefile
modified:   src/Tools/mrcImage/mrcImageSplit/src/mrcImageSplit.html

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Sat, 1 Nov 2014 01:08:07 +0000 (10:08 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
bin/wish/Display2/tclIndex
env/install-eos.sh

modified:   Makefile
modified:   bin/wish/Display2/tclIndex
modified:   env/Eos_env
modified:   env/install-eos.sh
deleted:    examples
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/Predicate-i.ri
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/predicate-i.ri

9 years agoModified dotSourceInMakefileCreate:
Takuo Yasunaga [Sat, 1 Nov 2014 00:42:15 +0000 (09:42 +0900)]
Modified dotSourceInMakefileCreate:
modified:   sbin/dotSourceInMakefileCreate
modified:   src/Config/Template/Makefile
modified:   src/Makefile
modified:   src/Objects/.Source.org

Recompiled:
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/Predicate-i.ri
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/predicate-i.ri
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageCTFCompensationForTiltImage
modified:   hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/mrcImageCTFCompensationForTiltImage
modified:   src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified:   src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/mrcImageCTFCompensationForTiltImage.c

pione-dir: deleted
deleted:    pione

9 years ago modified: hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
Takuo Yasunaga [Sat, 25 Oct 2014 06:57:41 +0000 (15:57 +0900)]
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a

9 years agoBug fixed: for -NoiseWeighted Brestore
Takuo Yasunaga [Wed, 22 Oct 2014 03:19:02 +0000 (12:19 +0900)]
Bug fixed: for -NoiseWeighted Brestore
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation

9 years agorebuild: mrcImageWindowing
Takuo Yasunaga [Sun, 19 Oct 2014 15:23:57 +0000 (00:23 +0900)]
rebuild: mrcImageWindowing

9 years agorecompiled:
Takuo Yasunaga [Sun, 19 Oct 2014 13:21:10 +0000 (22:21 +0900)]
recompiled:
modified:   hostdepend/X86LINUX64/*
bin/X86LINUX64/CheckCommonLineData

9 years agoRecompiled:
Takuo Yasunaga [Wed, 15 Oct 2014 20:46:19 +0000 (05:46 +0900)]
Recompiled:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageNullImageCreate
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64/mrcImageNullImageCreate

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Tue, 14 Oct 2014 09:58:00 +0000 (18:58 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html

modified:   Integration/FSC/Makefile
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcInfo
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMultiplying.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMultiplying.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageNoiseCreate.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageNoiseCreate.h
modified:   src/Objects/DataManip/mrcImage/src/mrcImagePrint.c
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.c
modified:   src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/mrcImageMultiplyingbyFile.c
modified:   src/Tools/mrcImage/mrcImageNoiseCreate/src/mrcImageNoiseCreate.c

9 years agorecompiled:
Takuo Yasunaga [Tue, 14 Oct 2014 00:12:38 +0000 (09:12 +0900)]
recompiled:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageMultiplyingbyFile
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageNoiseCreate
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/mrcImageFourierNeighborCorrelation
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64/mrcImageMultiplyingbyFile
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64/mrcImageNoiseCreate
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html

9 years agoRecompiled:
Takuo Yasunaga [Mon, 13 Oct 2014 01:43:43 +0000 (10:43 +0900)]
Recompiled:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation
new file:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageSpatialFrequencyFilter

9 years agoRebuild: for X86LINUX64
Takuo Yasunaga [Sun, 12 Oct 2014 06:58:02 +0000 (15:58 +0900)]
Rebuild: for X86LINUX64
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageMultiCTFCompensation
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libctfInfo.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageMultiCTFCompensation.sharedo
copied:     hostdepend/X86LINUX64/lib/X86LINUX64/libctfInfo.a -> hostdepend/X86LINUX64/src/Objects/DataManip/ctfInfo/src/X86LINUX64/libctfInfo.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a
new file:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierNeighborCorrelation.c
modified:   hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageMultiCTFCompensation.sharedo
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64/mrcImageMultiCTFCompensation

9 years agoModified for X86LINUX65:
Takuo Yasunaga [Sun, 12 Oct 2014 03:59:23 +0000 (12:59 +0900)]
Modified for X86LINUX65:
new file:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation

9 years agoBug fixed: Axis
Takuo Yasunaga [Sat, 4 Oct 2014 13:24:00 +0000 (22:24 +0900)]
Bug fixed: Axis
modified:   mrcImageHighPassFilter
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageHighPassFilter.c

9 years ago modified: Integration/FSC/Makefile
Takuo Yasunaga [Sat, 4 Oct 2014 00:21:17 +0000 (09:21 +0900)]
modified:   Integration/FSC/Makefile
modified:   bin/wish/Display2/tclIndex
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/*

9 years agoUpdate for X86LINUX64ICC
Takuo Yasunaga [Sat, 2 Aug 2014 09:22:54 +0000 (18:22 +0900)]
Update for X86LINUX64ICC
modified:   hostdepend/X86LINUX64ICC/*

9 years agoMerged Version for X86LINUX64
Takuo Yasunaga [Fri, 1 Aug 2014 18:41:22 +0000 (03:41 +0900)]
Merged Version for X86LINUX64
modified:   env/Eos_env
modified:   hostdepend/X86LINUX64/*
new file:   hostdepend/X86LINUX64ICC/*

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Sun, 27 Jul 2014 23:05:46 +0000 (08:05 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.so
lib/tclIndex

9 years agoBug fixed: mrc2map
Takuo Yasunaga [Sun, 27 Jul 2014 22:48:24 +0000 (07:48 +0900)]
Bug fixed: mrc2map
modified:   src/Objects/DataManip/mapFile/src/mapFileRead.c
modified:   src/Tools/mrcImage/mrc2dsn6/src/mrc2dsn6.c
modified:   src/Tools/mrcImage/mrc2map/src/mrc2map.c
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/src/test/Makefile

9 years agoRebuild for Tools:
Eos [Sun, 27 Jul 2014 11:15:49 +0000 (20:15 +0900)]
Rebuild for Tools:

9 years agolmrcImageFFT: for CUDA
Eos [Sun, 27 Jul 2014 09:15:57 +0000 (18:15 +0900)]
lmrcImageFFT: for CUDA
Bug fixed: fo cufftw

modified:   bin/wish/Display2/tclIndex
modified:   env/Eos_env
modified:   lib/tclIndex
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified:   src/Tools/Config/Define.inc
typechange: src/Tools/Makefile
typechange: src/Tools/mrcImage/Makefile
modified:   src/Tools/mrcImage/mrcImageFFT/Config/Define.inc
modified:   src/Tools/mrcImage/mrcImageFFT/doc/Makefile
modified:   src/Tools/mrcImage/mrcImageFFT/src/mrcImageFFT.c

9 years agoModified:
Takuo Yasunaga [Wed, 9 Jul 2014 23:22:39 +0000 (08:22 +0900)]
Modified:
Makefile for CUDA/nvcc

Modified:
modified:   .gitignore
modified:   bin/wish/Display2/tclIndex

rebuild:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/*

9 years agoRebuild for X86LINUX:
Takuo Yasunaga [Sun, 22 Jun 2014 23:12:21 +0000 (08:12 +0900)]
Rebuild for X86LINUX:
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*

9 years agoBug fixed:
Takuo Yasunaga [Sun, 22 Jun 2014 22:11:32 +0000 (07:11 +0900)]
Bug fixed:
Conflicts:
src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
src/Objects/DataExpress/gifFile/doc/gifFile.html
src/Objects/DataExpress/openGL/doc/openGL.html
src/Objects/DataExpress/psFile/doc/psFile.html
src/Objects/DataManip/ctfInfo/doc/ctfInfo.html
src/Objects/DataManip/llData/doc/llData.html
src/Objects/DataManip/transform/doc/transform.html
src/Objects/General/Matrix3D/doc/Matrix3D.html
src/Objects/General/Vector/doc/Vector.html
src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/dcdAtomChangeDistanceFromAtom.html
src/Tools/DCDFile/dcdAtomDistanceDistribution/src/dcdAtomDistanceDistribution.html
src/Tools/DCDFile/dcdFilePrint/src/dcdFilePrint.html
src/Tools/DCDFile/dcdInfo/src/dcdInfo.html
src/Tools/DCDFile/dcdSelectAtoms/src/dcdSelectAtoms.html
src/Tools/DCDFile/dcdSerectAtom/src/dcdSerectAtom.html
src/Tools/DCDFile/dcdTimeSeriesBehavior/src/dcdTimeSeriesBehavior.html
src/Tools/Integration/Display2/src/Display2.html
src/Tools/Integration/StereoDisplay/src/StereoDisplay.html
src/Tools/database/homology2PG/src/homology2PG.html
src/Tools/database/pgJournalSelect/src/pgJournalSelect.html
src/Tools/database/pgSelect/src/pgSelect.html
src/Tools/mrcImage/mrc2hdf/src/ALPHA
src/Tools/mrcImage/mrc2hdf/src/ALPHALINUX
src/Tools/mrcImage/mrc2hdf/src/ALPHALINUX5
src/Tools/mrcImage/mrc2hdf/src/ALPHAOSF1
src/Tools/mrcImage/mrc2hdf/src/HP
src/Tools/mrcImage/mrc2hdf/src/I386LINUX
src/Tools/mrcImage/mrc2hdf/src/SGI
src/Tools/mrcImage/mrcImageDensityInfo/src/mrcImageDensityInfo.html
src/Tools/mrcImage/mrcImageSphereCheck/src/mrcImageSphereCheck.html
src/Tools/mrcImage/mrcImageSplit/src/mrcImageSplit.html
src/Tools/mrcImage/mrcImageSuperResolution/src/mrcImageSuperResolution.html
src/Tools/mrcImage/mrcImageVolumeCalc/src/mrcImageVolumeCalc.html
src/Tools/mrcImage/mrcImageWindowing/src/mrcImageWindowing.html
src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/mrcSinogramFETsmoothParameterMatching.html
src/Tools/pdbUtil/pdb2mrc2d/src/pdb2mrc2d.html
src/Tools/pdbUtil/pdbChargeFit/src/pdbChargeFit.html
src/Tools/pdbUtil/pdbCrystalCreate/src/pdbCrystalCreate.html
src/Tools/pdbUtil/pdbHelix/src/pdbHelix.html
src/Tools/pdbUtil/pdbMove/src/pdbMove.html
src/Tools/pdbUtil/pdbPCA/src/pdbPCA.html
src/Tools/pdbUtil/pdbRhoFit/src/pdbRhoFit.html
src/Tools/pdbUtil/pdbRhoFitTm/src/pdbRhoFitTm.html
src/Tools/pdbUtil/pdbShapeFit/src/pdbShapeFit.html
src/Tools/pdbUtil/pdbTrans/src/pdbTrans.html
src/Tools/pdbUtil/pdbTwoProteinFit/src/pdbTwoProteinFit.html
src/Tools/rec3d/commonLinesSearchByVoting/src/commonLinesSearchByVoting.html

9 years agorebuild: for X86LINUX64/X86LINUX64ICC
Takuo Yasunaga [Sun, 22 Jun 2014 15:06:06 +0000 (00:06 +0900)]
rebuild: for X86LINUX64/X86LINUX64ICC
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*
modified:   hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/*

10 years agoBug fixed:
Takuo Yasunaga [Wed, 4 Jun 2014 10:16:48 +0000 (19:16 +0900)]
Bug fixed:
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c

10 years agoBug fixed: git-clone
Eos [Sat, 31 May 2014 22:29:14 +0000 (07:29 +0900)]
Bug fixed: git-clone
modified:   Makefile

10 years ago new file: Integration/Averaging2D/*
Takuo Yasunaga [Fri, 23 May 2014 21:59:50 +0000 (06:59 +0900)]
new file:   Integration/Averaging2D/*
new file:   include/eosFunc.h
modified:   include/lmrc2Dto3D.h
modified:   include/lmrcImageRhoFiltering.h
Add RhoFiltering Mode
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.h
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.h
Add New Objects, eosFunc : sinc, rect
new file:   src/Objects/General/eosFunc/*
modified:   src/Tools/Config/Define.inc
typechange: src/Tools/Makefile
Add RhoFiltering
modified:   src/Tools/rec3d/mrc2Dto3D/Config/OptionControlFile
typechange: src/Tools/rec3d/mrc2Dto3D/Makefile
modified:   src/Tools/rec3d/mrc2Dto3D/inc/mrc2Dto3D.h

10 years ago modified: src/Tools/rec3d/mrcImageOrientationSearch/src/mrcImageOrientationSearch.c
Takuo Yasunaga [Tue, 13 May 2014 05:14:43 +0000 (14:14 +0900)]
modified:   src/Tools/rec3d/mrcImageOrientationSearch/src/mrcImageOrientationSearch.c

10 years ago modified: mrcImageTfunction
Takuo Yasunaga [Mon, 12 May 2014 21:38:26 +0000 (06:38 +0900)]
modified:   mrcImageTfunction
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageTfunction.c

10 years agoBug fixed:
Takuo Yasunaga [Sun, 11 May 2014 14:03:33 +0000 (23:03 +0900)]
Bug fixed:
modified:   Makefile
bug fixed:   mrcImageClusterAnalysis
bug fixed:   pdbChargeFit

10 years agovalues.h
Takuo Yasunaga [Thu, 1 May 2014 04:59:37 +0000 (13:59 +0900)]
values.h
modified:   src/Tools/mrcImage/mrcImageClusterAnalysis/src/mrcImageClusterAnalysis.c

10 years agoRemake for make rebuild
Takuo Yasunaga [Thu, 1 May 2014 03:07:22 +0000 (12:07 +0900)]
Remake for make rebuild
modified:   src/Tools/mrcImage/mrcImageInfo/src/Makefile

10 years agovalues.h
Takuo Yasunaga [Wed, 30 Apr 2014 18:11:07 +0000 (03:11 +0900)]
values.h
mrcImageOrientationSearchBySimultaneousMinimization
mrcImageClusterAnalysis

10 years agoBug fixed: Compile error on OS-X : mrcImageClusterAnalysis
Takuo Yasunaga [Wed, 30 Apr 2014 10:35:28 +0000 (19:35 +0900)]
Bug fixed: Compile error on OS-X : mrcImageClusterAnalysis
modified:   src/Objects/General/Cluster/src/clusterLogRead.c

10 years agoAdd others2
Takuo Yasunaga [Tue, 29 Apr 2014 20:01:33 +0000 (05:01 +0900)]
Add others2
modified:   Makefile
Change a tool install method, i.e., When we cannot rebuild some tools, we do not install them.
modified:   src/Config/Template/ToolsTemplate.Dir/src/Makefile
Chnage eosCuda.c to eosCuda.cu
deleted:    hostdepend/X86LINUX64ICC/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.c

10 years ago modified: include/genUtil.h
Takuo Yasunaga [Fri, 25 Apr 2014 18:49:01 +0000 (03:49 +0900)]
modified:   include/genUtil.h
modified:   include/lmrcImageAddValue.h
modified:   include/pdbFile.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAddValue.c
modified:   src/Objects/DataManip/pdbFile/src/pdbTrans.c
modified:   src/Objects/DataManip/pdbFile/src/pdbTransCuda.cu
modified:   src/Objects/General/genUtil/inc/genUtil.h

10 years agoInstall Cuda
Takuo Yasunaga [Wed, 23 Apr 2014 13:43:12 +0000 (22:43 +0900)]
Install Cuda
new file:   hostdepend/X86LINUX64/util/X86LINUX64/cuda
Install ICC
new file:   hostdepend/X86LINUX64ICC/include/*.h
modified:   hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libEosObjects.a
Modify eosCuda
modified:   include/eosCuda.h
modified:   src/Objects/General/eosCuda/Config/Define.inc
modified:   src/Objects/General/eosCuda/inc/eosCuda.h
new file:   src/Objects/General/eosCuda/src/eosCuda.cu

Modify Configuration Files  for ICC and CUDA
modified:   include/pdbFile.h
modified:   src/Config/DefineObject.inc
modified:   src/Config/Template/ObjectsTemplate.Dir/src/ARCH/Makefile
modified:   src/Config/x86Linux64icc.inc
modified:   src/Objects/DataManip/Config/Define.inc
modified:   src/Tools/Config/Define.inc

Examples for CUDA Applications:
modified:   src/Tools/mrcImage/mrcImageAddValue/*
modified:   src/Tools/pdbUtil/pdbRotation/*
modified:   src/Objects/DataManip/pdbFile/src/pdbTrans.c
new file:   src/Objects/DataManip/pdbFile/src/pdbTransCuda.cu

10 years agoWe expanded a format of OptionControlFile and added the attribultes of option types
Takuo Yasunaga [Fri, 18 Apr 2014 19:54:28 +0000 (04:54 +0900)]
We expanded a format of OptionControlFile and added the attribultes of option types
    Ex. inFile ->> inFile::mrcImage or inFile::ASCII

new file:   sbin/awk/ctrl2Function.awk
modified:   sbin/awk/ctrl2argCheck.awk
modified:   sbin/awk/ctrl2configFileRead.awk
modified:   sbin/awk/ctrl2configFileUsage.awk
modified:   sbin/awk/ctrl2controlFile.awk
modified:   sbin/awk/ctrl2header.awk
modified:   sbin/awk/ctrl2init0.awk
modified:   sbin/awk/ctrl2init1.awk
modified:   sbin/awk/ctrl2khorospane.awk
modified:   sbin/awk/ctrl2usage.awk
modified:   sbin/awk/ctrlShow.awk
modified:   sbin/ctrl2argCheck
modified:   sbin/ctrl2configFileRead
modified:   sbin/ctrl2header
modified:   sbin/ctrl2init
modified:   sbin/ctrl2usage
modified:   sbin/ctrl2util

Modifiid Tools by new OptionControlFile

modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageInfo
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/llExtract
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageROI
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcInfo

10 years ago modified: mrcSinogramFETcalcSDforNormalize
Takuo Yasunaga [Mon, 24 Mar 2014 23:07:35 +0000 (08:07 +0900)]
modified:   mrcSinogramFETcalcSDforNormalize

10 years ago deleted: some files
Takuo Yasunaga [Mon, 24 Mar 2014 22:17:21 +0000 (07:17 +0900)]
deleted:    some files

10 years ago modified: mrcMeanYlinePos
Takuo Yasunaga [Mon, 24 Mar 2014 22:12:00 +0000 (07:12 +0900)]
modified:   mrcMeanYlinePos

10 years ago deleted: Some files
Takuo Yasunaga [Mon, 24 Mar 2014 21:39:29 +0000 (06:39 +0900)]
deleted:    Some files

10 years ago modified: mrcImage1dShiftByCorrelation
Takuo Yasunaga [Mon, 24 Mar 2014 21:36:25 +0000 (06:36 +0900)]
modified:   mrcImage1dShiftByCorrelation

10 years ago modified: src/Objects/DataManip/emData/src/emDataRead.c
Takuo Yasunaga [Mon, 24 Mar 2014 20:54:23 +0000 (05:54 +0900)]
modified:   src/Objects/DataManip/emData/src/emDataRead.c
modified:   src/Tools/filter/emData2mrc/src/emData2mrc

10 years ago modified: angleMatchTest_k
Takuo Yasunaga [Sun, 23 Mar 2014 20:10:16 +0000 (05:10 +0900)]
modified:   angleMatchTest_k
modified:   anglediffchk

10 years ago modified: mrc2fld
Takuo Yasunaga [Sun, 23 Mar 2014 00:55:11 +0000 (09:55 +0900)]
modified:   mrc2fld
modified:   llDataResolutionCheck.c

10 years agoTicket
Takuo Yasunaga [Sun, 23 Mar 2014 00:33:59 +0000 (09:33 +0900)]
Ticket
modified:   mrcImageCoreImageCalc
modified:   pdbChargeFit

10 years ago modified: mrcImageMultiCTFDetermination
Takuo Yasunaga [Thu, 20 Mar 2014 22:19:30 +0000 (07:19 +0900)]
modified:   mrcImageMultiCTFDetermination

10 years ago modified: ctfMultiFunction
Takuo Yasunaga [Thu, 20 Mar 2014 13:02:54 +0000 (22:02 +0900)]
modified:   ctfMultiFunction

10 years ago modified: src/Tools/mrcImage/mrcImageFOMCalc/src/mrcImageFOMCalc.c
Takuo Yasunaga [Thu, 20 Mar 2014 12:54:23 +0000 (21:54 +0900)]
modified:   src/Tools/mrcImage/mrcImageFOMCalc/src/mrcImageFOMCalc.c
deleted:    src/Tools/mrcImage/mrcImageAverage/src/.mrcImageAverage.c.swp

10 years ago modified: pdbListRMSDCalc.c
Takuo Yasunaga [Thu, 20 Mar 2014 12:30:25 +0000 (21:30 +0900)]
modified:   pdbListRMSDCalc.c

10 years ago modified: mrcImageFractalFourierShellCorrelation.c
Takuo Yasunaga [Thu, 20 Mar 2014 11:34:39 +0000 (20:34 +0900)]
modified:   mrcImageFractalFourierShellCorrelation.c
modified:   pdbListRMSDCalc.c

10 years agoBug fixed: Spell miss
Takuo Yasunaga [Fri, 7 Mar 2014 01:54:57 +0000 (10:54 +0900)]
Bug fixed: Spell miss
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageAutoFilamentExtract
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/mrcImageAutoFilamentExtract
modified:   src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/mrcImageAutoFilamentExtract.c

10 years ago modified: hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageAutoFilamentExtract
Takuo Yasunaga [Fri, 7 Mar 2014 00:43:03 +0000 (09:43 +0900)]
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageAutoFilamentExtract
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/pdbShapeFit
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/mrcImageAutoFilamentExtract
modified:   hostdepend/X86LINUX64/src/Tools/pdbUtil/pdbShapeFit/src/X86LINUX64/pdbShapeFit
modified:   src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/mrcImageAutoFilamentExtract.c
modified:   src/Tools/pdbUtil/pdbShapeFit/src/pdbShapeFit.c

10 years agoFixed: ticket #33385
Takuo Yasunaga [Thu, 6 Mar 2014 10:26:57 +0000 (19:26 +0900)]
Fixed: ticket #33385
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFTest
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFTest/src/X86LINUX64/Makefile
modified:   hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFTest/src/X86LINUX64/mrcImageFTest
modified:   src/Tools/mrcImage/mrcImageFTest/src/mrcImageFTest.c

10 years agoBug fixed:
Takuo Yasunaga [Wed, 19 Feb 2014 15:06:31 +0000 (00:06 +0900)]
Bug fixed:
mrcImageHighlighting

10 years agoBug fixed:#
Takuo Yasunaga [Tue, 18 Feb 2014 21:11:09 +0000 (06:11 +0900)]
Bug fixed:#
matrix3DInverse
vectorImageNearestNeighborMethod

10 years agoDensityMode:Bug fixed
Takuo Yasunaga [Fri, 14 Feb 2014 03:19:59 +0000 (12:19 +0900)]
DensityMode:Bug fixed
modified:   src/Objects/DataManip/pdbFile/src/lpdbSurface.c
modified:   src/Objects/DataManip/pdbFile/src/lpdbSurface.h
modified:   src/Tools/pdbUtil/pdbSurface/Config/OptionControlFile

10 years ago modified: Makefile
Takuo Yasunaga [Tue, 11 Feb 2014 19:35:44 +0000 (04:35 +0900)]
modified:   Makefile
new file:   bin/X86LINUX64ICC
new file:   bin/mrcImagePanoramaCreate
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*
modified:   hostdepend/X86LINUX64/lib/X86LINUX64/*
modified:   hostdepend/X86LINUX64/util/X86LINUX64/lib/libgif.la
modified:   hostdepend/X86LINUX64/util/X86LINUX64/lib/libjpeg.a
modified:   hostdepend/X86LINUX64/util/X86LINUX64/lib/libtiff.a
new file:   hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/*
new file:   hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/*
modified:   include/lmrcImageROI2D.h
modified:   sbin/MachineIndependent
modified:   src/Makefile
modified:   src/Tools/mrcImage/mrcImageROIs/inc/mrcImageROIs.h
modified:   util/X86LINUX64ICC

10 years agoFor showing step by step
Takuo Yasunaga [Sat, 11 Jan 2014 04:59:10 +0000 (13:59 +0900)]
For showing step by step
modified:   Makefile

For >2GB: int -> size_t
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/mrcImageWrite.c

A new tool to detect Object orientations.
new file:   src/Tools/mrcImage/mrcImageShapeOrientation/*

10 years ago modified: hostdepend/X86LINUX64ICC/*
Takuo Yasunaga [Wed, 18 Dec 2013 18:28:14 +0000 (03:28 +0900)]
modified:   hostdepend/X86LINUX64ICC/*
modified:   include/eosPThread.h
modified:   src/Tools/*/*/src/Makefile

10 years agoMakefile Modification for GPGPU
Takuo Yasunaga [Tue, 26 Nov 2013 04:07:13 +0000 (13:07 +0900)]
Makefile Modification for GPGPU
modified:   src/Config/Template/ToolsTemplate.Dir/src/ARCH/Makefile
modified:   src/Config/Template/ToolsTemplate.Dir/src/Makefile

Makefile modifiction for GPGPU
modified:   src/Config/x86Linux64.inc

pthread bug fix
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified:   src/Objects/General/eosPThread/doc/eosPThread.html
modified:   src/Objects/General/eosPThread/inc/eosPThread.h
modified:   src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified:   src/Tools/rec3d/mrc2Dto3D/ Config/OptionControlFile

Crystal.h modified
modified:   src/Objects/General/Crystal/inc/Crystal.h

10 years ago new file: bin/mrc2mrc
Takuo Yasunaga [Tue, 29 Oct 2013 16:28:35 +0000 (01:28 +0900)]
new file:   bin/mrc2mrc
mrcfile transform
modified:   env/Eos_env
for CUDA
new file:   eosCuda
new file:   include/eosCuda.h
for CUDA
modified:   hostdepend/X86LINUX64/*/X86LINUX64/*
new file:   hostdepend/X86LINUX64ICC/*/X86LINUX64ICC
for icc
modified:   include/Matrix3D.h
modified:   include/mrcImage.h
for mrc2mrc

10 years agoModeify compile options for -Wall
Takuo Yasunaga [Sat, 20 Jul 2013 21:32:31 +0000 (06:32 +0900)]
Modeify compile options for -Wall
modified:   src/Config/x86Linux64.inc

Create a new object : eosCuda for CUDA setting
new file:   src/Objects/General/eosCuda/
new file:   src/Objects/General/eosCuda/inc/eosCuda.h
new file:   src/Objects/General/eosCuda/src/eosCuda.c

Add Shepp and Logan models into mrcImageModelCreate
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/mrcImageModelCreate.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.h

Add usage
modified:   src/Tools/mrcImage/mrcImageSiemensStar/src/mrcImageSiemensStar.c

Modefy arrayPCA
modified:   src/Objects/General/Array/src/arrayPCA.c

10 years agoRecompiling ctfDisplay and Display2
Takuo Yasunaga [Fri, 5 Jul 2013 18:15:10 +0000 (03:15 +0900)]
Recompiling ctfDisplay and Display2

10 years ago modified: bin/wish/Display2/tclIndex
Takuo Yasunaga [Wed, 26 Jun 2013 05:26:37 +0000 (14:26 +0900)]
modified:   bin/wish/Display2/tclIndex
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*

10 years ago modified: src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/
Takuo Yasunaga [Tue, 25 Jun 2013 21:58:27 +0000 (06:58 +0900)]
modified:   src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/
Add the function of range restriction
related: modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
related: modified:   src/Objects/DataManip/mrcImage/src/mrcImageInfo.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcSinogramFET.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcSinogramFETPCA.c
related: previous modification for arrayPCA(add average argument);

10 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Mon, 24 Jun 2013 00:48:28 +0000 (09:48 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
.gitignore
src/Objects/*/*/doc/*.html

modified:   .gitignore
modified:   bin/wish/ctfDisplay/ctfDisplay.wish
modified:   hostdepend/I386LINUX/*
modified:   hostdepend/X86LINUX64/*
modified:   hostdepend/X86MAC64/*
modified:   include/mrcImage.h
modified:   lib/pdbFile.rb
modified:   sbin/makegeneral
modified:   src/Config/Template/ToolsTemplate.Dir/src/Makefile
deleted:    */.../.EosLog
deleted:    */.../*.html.orig
modified:   src/Tools/*/*/src/Makefile

10 years agomake rebuild for X86LINUX64
Takuo Yasunaga [Sat, 15 Jun 2013 07:03:32 +0000 (16:03 +0900)]
make rebuild for X86LINUX64
modified:   .gitignore
modified:   bin/wish/Display2/tclIndex

10 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Sat, 15 Jun 2013 00:26:12 +0000 (09:26 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
src/Tools/mrcImage/mrcImage3DPad/src/.EosLog

10 years agoFor consistency
Takuo Yasunaga [Sat, 15 Jun 2013 00:22:16 +0000 (09:22 +0900)]
For consistency

10 years ago deleted: hostdepend/X86LINUX64/src/Objects/DataExpress/openGL/src/X86LINUX64...
Takuo Yasunaga [Sat, 15 Jun 2013 00:17:03 +0000 (09:17 +0900)]
deleted:    hostdepend/X86LINUX64/src/Objects/DataExpress/openGL/src/X86LINUX64/lmolviePDBRead.c

10 years ago modified: env/Eos_env
Takuo Yasunaga [Fri, 14 Jun 2013 18:50:44 +0000 (03:50 +0900)]
modified:   env/Eos_env
modified:   mrcImage3DPad
add:        gsl as a free numerical analysis
modified:   sbin/dotSourceInMakefileCreate
modified:   src/Makefile
typechange: src/Tools/Makefile
modified:   src/Tools/*/*/src/Makefile

11 years agoBug fixed : mrc2Dto3D
Takuo Yasunaga [Wed, 29 May 2013 20:52:21 +0000 (05:52 +0900)]
Bug fixed : mrc2Dto3D
Apply eosPThread to mrc2Dto3D
thread-possible code separation related fftw

modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.h
modified:   src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageSectionGet.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified:   src/Tools/rec3d/mrc2Dto3D/Config/OptionControlFile
modified:   src/Tools/rec3d/mrc2Dto3D/src/Makefile
modified:   src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c
modified:   src/Tools/rec3d/mrc2Dto3D/src/test/Makefile

11 years ago modified: src/Config/Template/ToolsTemplate.Dir/src/Makefile
Takuo Yasunaga [Sun, 12 May 2013 22:28:12 +0000 (07:28 +0900)]
modified:   src/Config/Template/ToolsTemplate.Dir/src/Makefile
modified:   src/Objects/DataManip/mrcImage/src/mrcImageGet.c
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c

11 years agocompilineg : eosPoint and eosList
Takuo Yasunaga [Sun, 12 May 2013 07:01:29 +0000 (16:01 +0900)]
compilineg : eosPoint and eosList
new file:   include/eosList.h
modified:   include/eosPoint.h
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c

11 years agoDelete wrong files
Takuo Yasunaga [Sun, 5 May 2013 02:05:13 +0000 (11:05 +0900)]
Delete wrong files

11 years ago modified: Makefile
Takuo Yasunaga [Fri, 3 May 2013 20:42:19 +0000 (05:42 +0900)]
modified:   Makefile
modified:   mrcImageNoiseReductionByRelaxation
modified:   src/Tools/Config/Define.inc

11 years agoDevelope a new tool: mrcImageBilateralFilter
Takuo Yasunaga [Mon, 29 Apr 2013 07:57:36 +0000 (16:57 +0900)]
Develope a new tool: mrcImageBilateralFilter
                     lmrcImageBilateralFilter()
in lmrcImageBilateralFilter.c
   lmrcImageBilateralFilter.h

11 years agoAdd mrcImageConvolution
Takuo Yasunaga [Wed, 3 Apr 2013 22:51:58 +0000 (07:51 +0900)]
Add mrcImageConvolution
Modify array2mrc
modified:   Makefile
new file:   bin/mrcImageConvolution
modified:   env/Eos_env
new file:   hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/larray2mrc.c
modified:   include/Array.h
new file:   include/larray2mrc.h
modified:   include/lmrcImageMorphology.h
modified:   include/mrcImage.h
new file:   src/Objects/General/Array/src/larray2mrc.c
modified:   src/Tools/filter/array2mrc/src/array2mrc.c

11 years agoModified Eos/Makefile
Takuo Yasunaga [Sun, 31 Mar 2013 09:41:02 +0000 (18:41 +0900)]
Modified Eos/Makefile
modified:   Makefile

Add new tools for mathematical morphology
new file:   mrcImageClosing
new file:   mrcImageDilation
new file:   mrcImageErosion
new file:   mrcImageOpening

Add new object methods
new file:   lmrcImageDilation.c
new file:   lmrcImageErosion.c
new file:   lmrcImageMorphology.c
new file:   lmrcImageOpening.c
new file:   lmrcImageDilation.c
new file:   lmrcImageErosion.c
new file:   lmrcImageMorphology.c
new file:   lmrcImageOpening.c
new file:   lmrcImageMorphology.h

Add Lee-sigma filter in mrcImageSmoothing
modified:   mrcImageSmoothing

Add examples of Makefile in the directory of Integration/
new file:   Integration/CTF/Makefile-CTF
new file:   Integration/Compare/MakefileCompare
new file:   Integration/MultiCTF/Makefile.ForFukunaga
new file:   Integration/MultiCTF/Makefile.ForFukunaga2
new file:   Integration/RandomConical/Makefile.RandomConical
new file:   Integration/RandomConical/Makefile.To.RandomConical
new file:   Integration/SingleParticle/Makefile-fromKanae
new file:   Integration/Tomography/Makefile.Tomo
new file:   Integration/Tomography/Makefile.Tomo2
new file:   Integration/Tomography/Makefile.Tomo2-TakazakiVersion
new file:   Integration/Tomography/Makefile.Tomo2-TakazakiVersion2
new file:   Integration/Tomography/Makefile.fromMingyue20090502
new file:   Integration/Tomography/Makefile.fromMingyue20090519
new file:   Integration/Tomography/Makefile.fromMingyue2009059
new file:   Integration/Tomography/Makefile.fromMingyue20110507

11 years agoupdate pdbMove. Add -toOrigin -originTo -GCtoOrigin
Takuo Yasunaga [Sun, 24 Mar 2013 19:44:40 +0000 (04:44 +0900)]
update pdbMove. Add -toOrigin -originTo -GCtoOrigin

11 years agoChange util directories
Takuo Yasunaga [Sun, 24 Mar 2013 12:12:44 +0000 (21:12 +0900)]
Change util directories

11 years agoUpdate pdbPCA, -oU -oM -oPDB
Takuo Yasunaga [Sun, 24 Mar 2013 01:26:08 +0000 (10:26 +0900)]
Update pdbPCA, -oU -oM -oPDB

11 years agomrcInfoSet has been updated and renewed to set FixedValues as default values.
Takuo Yasunaga [Wed, 6 Mar 2013 23:49:25 +0000 (08:49 +0900)]
mrcInfoSet has been updated and renewed to set FixedValues as default values.

11 years agoAdd mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtrac...
Takuo Yasunaga [Wed, 6 Feb 2013 23:03:11 +0000 (08:03 +0900)]
Add mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtraction and mrcImageNormalizedSubtraction. Modify mrcImageInit.

11 years agomodify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend

11 years agoseparate host-dependent binaries.
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.