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Takuo Yasunaga [Thu, 6 Mar 2014 10:26:57 +0000 (19:26 +0900)]
Fixed: ticket #33385
modified: hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFTest
modified: hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFTest/src/X86LINUX64/Makefile
modified: hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFTest/src/X86LINUX64/mrcImageFTest
modified: src/Tools/mrcImage/mrcImageFTest/src/mrcImageFTest.c
Takuo Yasunaga [Wed, 19 Feb 2014 15:06:31 +0000 (00:06 +0900)]
Bug fixed:
mrcImageHighlighting
Takuo Yasunaga [Tue, 18 Feb 2014 21:11:09 +0000 (06:11 +0900)]
Bug fixed:#
matrix3DInverse
vectorImageNearestNeighborMethod
Takuo Yasunaga [Fri, 14 Feb 2014 03:19:59 +0000 (12:19 +0900)]
DensityMode:Bug fixed
modified: src/Objects/DataManip/pdbFile/src/lpdbSurface.c
modified: src/Objects/DataManip/pdbFile/src/lpdbSurface.h
modified: src/Tools/pdbUtil/pdbSurface/Config/OptionControlFile
Takuo Yasunaga [Tue, 11 Feb 2014 19:35:44 +0000 (04:35 +0900)]
modified: Makefile
new file: bin/X86LINUX64ICC
new file: bin/mrcImagePanoramaCreate
modified: hostdepend/X86LINUX64/bin/X86LINUX64/*
modified: hostdepend/X86LINUX64/lib/X86LINUX64/*
modified: hostdepend/X86LINUX64/util/X86LINUX64/lib/libgif.la
modified: hostdepend/X86LINUX64/util/X86LINUX64/lib/libjpeg.a
modified: hostdepend/X86LINUX64/util/X86LINUX64/lib/libtiff.a
new file: hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/*
new file: hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/*
modified: include/lmrcImageROI2D.h
modified: sbin/MachineIndependent
modified: src/Makefile
modified: src/Tools/mrcImage/mrcImageROIs/inc/mrcImageROIs.h
modified: util/X86LINUX64ICC
Takuo Yasunaga [Sat, 11 Jan 2014 04:59:10 +0000 (13:59 +0900)]
For showing step by step
modified: Makefile
For >2GB: int -> size_t
modified: src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified: src/Objects/DataManip/mrcImage/src/mrcImageWrite.c
A new tool to detect Object orientations.
new file: src/Tools/mrcImage/mrcImageShapeOrientation/*
Takuo Yasunaga [Wed, 18 Dec 2013 18:28:14 +0000 (03:28 +0900)]
modified: hostdepend/X86LINUX64ICC/*
modified: include/eosPThread.h
modified: src/Tools/*/*/src/Makefile
Takuo Yasunaga [Tue, 26 Nov 2013 04:07:13 +0000 (13:07 +0900)]
Makefile Modification for GPGPU
modified: src/Config/Template/ToolsTemplate.Dir/src/ARCH/Makefile
modified: src/Config/Template/ToolsTemplate.Dir/src/Makefile
Makefile modifiction for GPGPU
modified: src/Config/x86Linux64.inc
pthread bug fix
modified: src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified: src/Objects/General/eosPThread/doc/eosPThread.html
modified: src/Objects/General/eosPThread/inc/eosPThread.h
modified: src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified: src/Tools/rec3d/mrc2Dto3D/ Config/OptionControlFile
Crystal.h modified
modified: src/Objects/General/Crystal/inc/Crystal.h
Takuo Yasunaga [Tue, 29 Oct 2013 16:28:35 +0000 (01:28 +0900)]
new file: bin/mrc2mrc
mrcfile transform
modified: env/Eos_env
for CUDA
new file: eosCuda
new file: include/eosCuda.h
for CUDA
modified: hostdepend/X86LINUX64/*/X86LINUX64/*
new file: hostdepend/X86LINUX64ICC/*/X86LINUX64ICC
for icc
modified: include/Matrix3D.h
modified: include/mrcImage.h
for mrc2mrc
Takuo Yasunaga [Sat, 20 Jul 2013 21:32:31 +0000 (06:32 +0900)]
Modeify compile options for -Wall
modified: src/Config/x86Linux64.inc
Create a new object : eosCuda for CUDA setting
new file: src/Objects/General/eosCuda/
new file: src/Objects/General/eosCuda/inc/eosCuda.h
new file: src/Objects/General/eosCuda/src/eosCuda.c
Add Shepp and Logan models into mrcImageModelCreate
modified: src/Tools/mrcImage/mrcImageModelCreate/src/mrcImageModelCreate.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.h
Add usage
modified: src/Tools/mrcImage/mrcImageSiemensStar/src/mrcImageSiemensStar.c
Modefy arrayPCA
modified: src/Objects/General/Array/src/arrayPCA.c
Takuo Yasunaga [Fri, 5 Jul 2013 18:15:10 +0000 (03:15 +0900)]
Recompiling ctfDisplay and Display2
Takuo Yasunaga [Wed, 26 Jun 2013 05:26:37 +0000 (14:26 +0900)]
modified: bin/wish/Display2/tclIndex
modified: hostdepend/X86LINUX64/bin/X86LINUX64/*
Takuo Yasunaga [Tue, 25 Jun 2013 21:58:27 +0000 (06:58 +0900)]
modified: src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/
Add the function of range restriction
related: modified: src/Objects/DataManip/mrcImage/inc/mrcImage.h
related: modified: src/Objects/DataManip/mrcImage/src/mrcImageInfo.c
modified: src/Objects/DataManip/mrcImage/src/lmrcSinogramFET.h
modified: src/Objects/DataManip/mrcImage/src/lmrcSinogramFETPCA.c
related: previous modification for arrayPCA(add average argument);
Takuo Yasunaga [Mon, 24 Jun 2013 00:48:28 +0000 (09:48 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Conflicts:
.gitignore
src/Objects/*/*/doc/*.html
modified: .gitignore
modified: bin/wish/ctfDisplay/ctfDisplay.wish
modified: hostdepend/I386LINUX/*
modified: hostdepend/X86LINUX64/*
modified: hostdepend/X86MAC64/*
modified: include/mrcImage.h
modified: lib/pdbFile.rb
modified: sbin/makegeneral
modified: src/Config/Template/ToolsTemplate.Dir/src/Makefile
deleted: */.../.EosLog
deleted: */.../*.html.orig
modified: src/Tools/*/*/src/Makefile
Takuo Yasunaga [Sat, 15 Jun 2013 07:03:32 +0000 (16:03 +0900)]
make rebuild for X86LINUX64
modified: .gitignore
modified: bin/wish/Display2/tclIndex
Takuo Yasunaga [Sat, 15 Jun 2013 00:26:12 +0000 (09:26 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Conflicts:
src/Tools/mrcImage/mrcImage3DPad/src/.EosLog
Takuo Yasunaga [Sat, 15 Jun 2013 00:22:16 +0000 (09:22 +0900)]
For consistency
Takuo Yasunaga [Sat, 15 Jun 2013 00:17:03 +0000 (09:17 +0900)]
deleted: hostdepend/X86LINUX64/src/Objects/DataExpress/openGL/src/X86LINUX64/lmolviePDBRead.c
Takuo Yasunaga [Fri, 14 Jun 2013 18:50:44 +0000 (03:50 +0900)]
modified: env/Eos_env
modified: mrcImage3DPad
add: gsl as a free numerical analysis
modified: sbin/dotSourceInMakefileCreate
modified: src/Makefile
typechange: src/Tools/Makefile
modified: src/Tools/*/*/src/Makefile
Takuo Yasunaga [Wed, 29 May 2013 20:52:21 +0000 (05:52 +0900)]
Bug fixed : mrc2Dto3D
Apply eosPThread to mrc2Dto3D
thread-possible code separation related fftw
modified: src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.h
modified: src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified: src/Objects/DataManip/mrcImage/src/mrcImageSectionGet.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified: src/Tools/rec3d/mrc2Dto3D/Config/OptionControlFile
modified: src/Tools/rec3d/mrc2Dto3D/src/Makefile
modified: src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c
modified: src/Tools/rec3d/mrc2Dto3D/src/test/Makefile
Takuo Yasunaga [Sun, 12 May 2013 22:28:12 +0000 (07:28 +0900)]
modified: src/Config/Template/ToolsTemplate.Dir/src/Makefile
modified: src/Objects/DataManip/mrcImage/src/mrcImageGet.c
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
Takuo Yasunaga [Sun, 12 May 2013 07:01:29 +0000 (16:01 +0900)]
compilineg : eosPoint and eosList
new file: include/eosList.h
modified: include/eosPoint.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
Takuo Yasunaga [Sun, 5 May 2013 02:05:13 +0000 (11:05 +0900)]
Delete wrong files
Takuo Yasunaga [Fri, 3 May 2013 20:42:19 +0000 (05:42 +0900)]
modified: Makefile
modified: mrcImageNoiseReductionByRelaxation
modified: src/Tools/Config/Define.inc
Takuo Yasunaga [Mon, 29 Apr 2013 07:57:36 +0000 (16:57 +0900)]
Develope a new tool: mrcImageBilateralFilter
lmrcImageBilateralFilter()
in lmrcImageBilateralFilter.c
lmrcImageBilateralFilter.h
Takuo Yasunaga [Wed, 3 Apr 2013 22:51:58 +0000 (07:51 +0900)]
Add mrcImageConvolution
Modify array2mrc
modified: Makefile
new file: bin/mrcImageConvolution
modified: env/Eos_env
new file: hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/larray2mrc.c
modified: include/Array.h
new file: include/larray2mrc.h
modified: include/lmrcImageMorphology.h
modified: include/mrcImage.h
new file: src/Objects/General/Array/src/larray2mrc.c
modified: src/Tools/filter/array2mrc/src/array2mrc.c
Takuo Yasunaga [Sun, 31 Mar 2013 09:41:02 +0000 (18:41 +0900)]
Modified Eos/Makefile
modified: Makefile
Add new tools for mathematical morphology
new file: mrcImageClosing
new file: mrcImageDilation
new file: mrcImageErosion
new file: mrcImageOpening
Add new object methods
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageMorphology.h
Add Lee-sigma filter in mrcImageSmoothing
modified: mrcImageSmoothing
Add examples of Makefile in the directory of Integration/
new file: Integration/CTF/Makefile-CTF
new file: Integration/Compare/MakefileCompare
new file: Integration/MultiCTF/Makefile.ForFukunaga
new file: Integration/MultiCTF/Makefile.ForFukunaga2
new file: Integration/RandomConical/Makefile.RandomConical
new file: Integration/RandomConical/Makefile.To.RandomConical
new file: Integration/SingleParticle/Makefile-fromKanae
new file: Integration/Tomography/Makefile.Tomo
new file: Integration/Tomography/Makefile.Tomo2
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion2
new file: Integration/Tomography/Makefile.fromMingyue20090502
new file: Integration/Tomography/Makefile.fromMingyue20090519
new file: Integration/Tomography/Makefile.fromMingyue2009059
new file: Integration/Tomography/Makefile.fromMingyue20110507
Takuo Yasunaga [Sun, 24 Mar 2013 19:44:40 +0000 (04:44 +0900)]
update pdbMove. Add -toOrigin -originTo -GCtoOrigin
Takuo Yasunaga [Sun, 24 Mar 2013 12:12:44 +0000 (21:12 +0900)]
Change util directories
Takuo Yasunaga [Sun, 24 Mar 2013 01:26:08 +0000 (10:26 +0900)]
Update pdbPCA, -oU -oM -oPDB
Takuo Yasunaga [Wed, 6 Mar 2013 23:49:25 +0000 (08:49 +0900)]
mrcInfoSet has been updated and renewed to set FixedValues as default values.
Takuo Yasunaga [Wed, 6 Feb 2013 23:03:11 +0000 (08:03 +0900)]
Add mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtraction and mrcImageNormalizedSubtraction. Modify mrcImageInit.
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.
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