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Takuo Yasunaga [Wed, 29 May 2013 20:52:21 +0000 (05:52 +0900)]
Bug fixed : mrc2Dto3D
Apply eosPThread to mrc2Dto3D
thread-possible code separation related fftw
modified: src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.h
modified: src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified: src/Objects/DataManip/mrcImage/src/mrcImageSectionGet.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified: src/Tools/rec3d/mrc2Dto3D/Config/OptionControlFile
modified: src/Tools/rec3d/mrc2Dto3D/src/Makefile
modified: src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c
modified: src/Tools/rec3d/mrc2Dto3D/src/test/Makefile
Takuo Yasunaga [Sun, 12 May 2013 22:28:12 +0000 (07:28 +0900)]
modified: src/Config/Template/ToolsTemplate.Dir/src/Makefile
modified: src/Objects/DataManip/mrcImage/src/mrcImageGet.c
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
Takuo Yasunaga [Sun, 12 May 2013 07:01:29 +0000 (16:01 +0900)]
compilineg : eosPoint and eosList
new file: include/eosList.h
modified: include/eosPoint.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
Takuo Yasunaga [Sun, 5 May 2013 02:05:13 +0000 (11:05 +0900)]
Delete wrong files
Takuo Yasunaga [Fri, 3 May 2013 20:42:19 +0000 (05:42 +0900)]
modified: Makefile
modified: mrcImageNoiseReductionByRelaxation
modified: src/Tools/Config/Define.inc
Takuo Yasunaga [Mon, 29 Apr 2013 07:57:36 +0000 (16:57 +0900)]
Develope a new tool: mrcImageBilateralFilter
lmrcImageBilateralFilter()
in lmrcImageBilateralFilter.c
lmrcImageBilateralFilter.h
Takuo Yasunaga [Wed, 3 Apr 2013 22:51:58 +0000 (07:51 +0900)]
Add mrcImageConvolution
Modify array2mrc
modified: Makefile
new file: bin/mrcImageConvolution
modified: env/Eos_env
new file: hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/larray2mrc.c
modified: include/Array.h
new file: include/larray2mrc.h
modified: include/lmrcImageMorphology.h
modified: include/mrcImage.h
new file: src/Objects/General/Array/src/larray2mrc.c
modified: src/Tools/filter/array2mrc/src/array2mrc.c
Takuo Yasunaga [Sun, 31 Mar 2013 09:41:02 +0000 (18:41 +0900)]
Modified Eos/Makefile
modified: Makefile
Add new tools for mathematical morphology
new file: mrcImageClosing
new file: mrcImageDilation
new file: mrcImageErosion
new file: mrcImageOpening
Add new object methods
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageMorphology.h
Add Lee-sigma filter in mrcImageSmoothing
modified: mrcImageSmoothing
Add examples of Makefile in the directory of Integration/
new file: Integration/CTF/Makefile-CTF
new file: Integration/Compare/MakefileCompare
new file: Integration/MultiCTF/Makefile.ForFukunaga
new file: Integration/MultiCTF/Makefile.ForFukunaga2
new file: Integration/RandomConical/Makefile.RandomConical
new file: Integration/RandomConical/Makefile.To.RandomConical
new file: Integration/SingleParticle/Makefile-fromKanae
new file: Integration/Tomography/Makefile.Tomo
new file: Integration/Tomography/Makefile.Tomo2
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion2
new file: Integration/Tomography/Makefile.fromMingyue20090502
new file: Integration/Tomography/Makefile.fromMingyue20090519
new file: Integration/Tomography/Makefile.fromMingyue2009059
new file: Integration/Tomography/Makefile.fromMingyue20110507
Takuo Yasunaga [Sun, 24 Mar 2013 19:44:40 +0000 (04:44 +0900)]
update pdbMove. Add -toOrigin -originTo -GCtoOrigin
Takuo Yasunaga [Sun, 24 Mar 2013 12:12:44 +0000 (21:12 +0900)]
Change util directories
Takuo Yasunaga [Sun, 24 Mar 2013 01:26:08 +0000 (10:26 +0900)]
Update pdbPCA, -oU -oM -oPDB
Takuo Yasunaga [Wed, 6 Mar 2013 23:49:25 +0000 (08:49 +0900)]
mrcInfoSet has been updated and renewed to set FixedValues as default values.
Takuo Yasunaga [Wed, 6 Feb 2013 23:03:11 +0000 (08:03 +0900)]
Add mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtraction and mrcImageNormalizedSubtraction. Modify mrcImageInit.
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.