Bug fixed : mrc2Dto3D
Apply eosPThread to mrc2Dto3D
thread-possible code separation related fftw

modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFFT.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRhoFiltering.h
modified:   src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageSectionGet.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.h
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified:   src/Tools/rec3d/mrc2Dto3D/Config/OptionControlFile
modified:   src/Tools/rec3d/mrc2Dto3D/src/Makefile
modified:   src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c
modified:   src/Tools/rec3d/mrc2Dto3D/src/test/Makefile

modified:   src/Config/Template/ToolsTemplate.Dir/src/Makefile
modified:   src/Objects/DataManip/mrcImage/src/mrcImageGet.c
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c

compilineg : eosPoint and eosList
new file:   include/eosList.h
modified:   include/eosPoint.h
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c

Delete wrong files

modified:   Makefile
modified:   mrcImageNoiseReductionByRelaxation
modified:   src/Tools/Config/Define.inc

Develope a new tool: mrcImageBilateralFilter
                     lmrcImageBilateralFilter()
in lmrcImageBilateralFilter.c
   lmrcImageBilateralFilter.h

Add mrcImageConvolution
Modify array2mrc
modified:   Makefile
new file:   bin/mrcImageConvolution
modified:   env/Eos_env
new file:   hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/larray2mrc.c
modified:   include/Array.h
new file:   include/larray2mrc.h
modified:   include/lmrcImageMorphology.h
modified:   include/mrcImage.h
new file:   src/Objects/General/Array/src/larray2mrc.c
modified:   src/Tools/filter/array2mrc/src/array2mrc.c

Modified Eos/Makefile
modified:   Makefile

Add new tools for mathematical morphology
new file:   mrcImageClosing
new file:   mrcImageDilation
new file:   mrcImageErosion
new file:   mrcImageOpening

Add new object methods
new file:   lmrcImageDilation.c
new file:   lmrcImageErosion.c
new file:   lmrcImageMorphology.c
new file:   lmrcImageOpening.c
new file:   lmrcImageDilation.c
new file:   lmrcImageErosion.c
new file:   lmrcImageMorphology.c
new file:   lmrcImageOpening.c
new file:   lmrcImageMorphology.h

Add Lee-sigma filter in mrcImageSmoothing
modified:   mrcImageSmoothing

Add examples of Makefile in the directory of Integration/
new file:   Integration/CTF/Makefile-CTF
new file:   Integration/Compare/MakefileCompare
new file:   Integration/MultiCTF/Makefile.ForFukunaga
new file:   Integration/MultiCTF/Makefile.ForFukunaga2
new file:   Integration/RandomConical/Makefile.RandomConical
new file:   Integration/RandomConical/Makefile.To.RandomConical
new file:   Integration/SingleParticle/Makefile-fromKanae
new file:   Integration/Tomography/Makefile.Tomo
new file:   Integration/Tomography/Makefile.Tomo2
new file:   Integration/Tomography/Makefile.Tomo2-TakazakiVersion
new file:   Integration/Tomography/Makefile.Tomo2-TakazakiVersion2
new file:   Integration/Tomography/Makefile.fromMingyue20090502
new file:   Integration/Tomography/Makefile.fromMingyue20090519
new file:   Integration/Tomography/Makefile.fromMingyue2009059
new file:   Integration/Tomography/Makefile.fromMingyue20110507

update pdbMove. Add -toOrigin -originTo -GCtoOrigin

Change util directories

Update pdbPCA, -oU -oM -oPDB

mrcInfoSet has been updated and renewed to set FixedValues as default values.

Add mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtraction and mrcImageNormalizedSubtraction. Modify mrcImageInit.

modify Makefiles to move hostdependent files to EOS_HOME/hostdepend

separate host-dependent binaries.