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Takuo Yasunaga [Sun, 22 Jun 2014 22:28:47 +0000 (07:28 +0900)]
Bug fixed:
Takuo Yasunaga [Sun, 22 Jun 2014 15:03:48 +0000 (00:03 +0900)]
Create a new command for edge enhancement before edge detection
new file: mrcImageEdgeEnhancement
modified: lmrcImageEdgeEnhancement.h
modified: src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
new file: src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c
new file: src/Objects/DataManip/mrcImage/src/lmrcImageRoberts.c
new file: src/Objects/DataManip/mrcImage/src/lmrcImageSobel.c
modified: src/Tools/Config/Define.inc
modified: src/Tools/mrcImage/mrcImageEdgeEnhancement/*
Takuo Yasunaga [Sat, 21 Jun 2014 09:18:51 +0000 (18:18 +0900)]
Create a new command:
new file: bin/mrcImageDividedByFile
new file: hostdepend/X86MAC64/bin/X86MAC64/mrcImageDividedByFile
Bug fixed: Devided -> Divided : Spell-missing
modified: include/mrcImage.h
modified: src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified: src/Objects/DataManip/mrcImage/src/lmrcImageAverage.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageMontageCreate.c
modified: src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified: src/Tools/Config/Define.inc
new file: src/Tools/mrcImage/mrcImageDividedByFile/*
Takuo Yasunaga [Sat, 21 Jun 2014 07:11:26 +0000 (16:11 +0900)]
Create A new tool:
new file: bin/mrcImageLogicalOperation
new file: hostdepend/X86MAC64/bin/X86MAC64/mrcImageLogicalOperation
new file: lmrcImageLogic.h
new file: lmrcImageLogicalOperation.c
modified: src/Tools/Config/Define.inc
new file: src/Tools/mrcImage/mrcImageLogicalOperation/*
Config/Define.inc
Takuo Yasunaga [Sat, 21 Jun 2014 04:06:21 +0000 (13:06 +0900)]
Create New Tools:
new file: mrcImageBottomHatTransform
new file: mrcImageTopHatTransform
new file: include/lmrcImageEdgeEnhancement.h
new file: src/Objects/DataManip/mrcImage/src/lmrcImageBottomHatTransform.c
new file: src/Objects/DataManip/mrcImage/src/lmrcImageTopHatTransform.c
modified: src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.h
modified: src/Tools/Config/Define.inc
modified: src/Tools/Makefile
Under construction
modified: include/lmrcImageMorphology.h
new file: src/Tools/mrcImage/mrcImageEdgeEnhancement/*
Takuo Yasunaga [Fri, 20 Jun 2014 22:37:54 +0000 (07:37 +0900)]
Under construction.
modified: hostdepend/X86MAC64/src/Tools/rec3d/marker2Dto3DEstimator/src/X86MAC64/marker2Dto3DEstimator
modified: src/Tools/rec3d/marker2Dto3DEstimator/Config/OptionControlFile
modified: src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c
Takuo Yasunaga [Wed, 11 Jun 2014 04:33:47 +0000 (13:33 +0900)]
New tools
new file: bin/mrcImageAsProbability
new file: bin/mrcImageDeconvolution
new file: bin/marker2Dto3DEstimator
Takuo Yasunaga [Sun, 1 Jun 2014 06:38:42 +0000 (15:38 +0900)]
Add weighted Back-projection lmrc2Dto3D: -m 2
modified: src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified: src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c
modified: src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c
Takuo Yasunaga [Fri, 30 May 2014 02:59:29 +0000 (11:59 +0900)]
Bug fixed:
modified: src/Tools/rec3d/mrcImageInverseRadonTransform/src/mrcImageInverseRadonTransform.c
Under construction:
modified: src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c
Takuo Yasunaga [Mon, 26 May 2014 18:38:46 +0000 (03:38 +0900)]
Bug fixed:
modified: hostdepend/X86MAC64/bin/X86MAC64/mrcImagePad
modified: hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageFFT.sharedo
modified: hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageTriming.sharedo
new file: hostdepend/X86MAC64/util/X86MAC64/cuda
modified: src/Objects/DataManip/mrcImage/src/lmrcImageTriming.c
Takuo Yasunaga [Mon, 26 May 2014 17:46:56 +0000 (02:46 +0900)]
modified: env/Eos_env
modify util/HOSTDIR/bin
modified: include/Matrix3D.h
modified: include/eosPoint.h
modified: include/genUtil.h
modified: include/lmrcImageMasking.h
modified: src/Objects/General/Matrix3D/inc/Matrix3D.h
modified: src/Objects/General/Memory/inc/Memory.h
modified: src/Objects/General/Memory/src/memoryAllocate.c
modified: src/Objects/General/Memory/src/memoryByteSwap.c
new file: src/Objects/General/eosFunc/*
Add a new object of eosFunc: Sync/Rect
modified: src/Objects/General/eosPoint/*
Add eosPoint for maker
new file: bin/eosPointRotation
new file: src/Tools/rec3d/marker2Dto3DEstimator/*
Not yet completed
Takuo Yasunaga [Sun, 18 May 2014 12:04:15 +0000 (21:04 +0900)]
modified: hostdepend/X86MAC64/*
modified: include/lmrc2Dto3D.h
modified: src/Config/x86Mac64.inc
modified: src/Objects/DataExpress/eosRuby/src/Swig/mkmf.log
modified: src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified: src/Objects/General/eosCuda/src/eosCuda.cu
modified: src/*/*/*/src/Makefile
Takuo Yasunaga [Sun, 11 May 2014 22:36:46 +0000 (07:36 +0900)]
modified: hostdepend/X86MAC64/bin/X86MAC64/tiff2mrc
modified: hostdepend/X86MAC64/src/Tools/filter/tiff2mrc/src/X86MAC64/tiff2mrc
modified: src/Config/x86Mac64.inc
deleted: src/Objects/General/eosCuda/src/eosCuda.c
Takuo Yasunaga [Sun, 11 May 2014 22:22:59 +0000 (07:22 +0900)]
new file: Integration/Tomography/Makefile.recent
modified: Makefile
modified: hostdepend/X86MAC64/bin/X86MAC64/mrc2tiff
modified: hostdepend/X86MAC64/bin/X86MAC64/mrc2gif
modified: hostdepend/X86MAC64/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/mrc2Dto3D
added: libtiff, libgif
added: cuda
modified: include/eosPThread.h
modified: src/Config/x86Mac64.inc
modified: src/Objects/General/eosPThread/src/eosPThreadInit.c
modified: src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified: src/Tools/rec3d/mrc2Dto3D/Config/Define.inc
new file: util/srcX86MAC64
Takuo Yasunaga [Mon, 28 Apr 2014 23:31:28 +0000 (08:31 +0900)]
deleted: "\177"
deleted: "\177\177"
Takuo Yasunaga [Thu, 27 Feb 2014 20:00:25 +0000 (05:00 +0900)]
modified: Makefile
modified: bin/wish/ctfDisplay/ctfDisplay.wish
recompiled for X86MAC64: hostdepend/X86MAC64/bin/X86MAC64/*
recompiled for X86MAC64: hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageSummationCalculate.sharedo
Takuo Yasunaga [Sat, 15 Jun 2013 05:30:46 +0000 (14:30 +0900)]
Rebuild for X68MAC
Takuo Yasunaga [Fri, 31 May 2013 16:36:54 +0000 (01:36 +0900)]
Change src/Makefile
Takuo Yasunaga [Sat, 25 May 2013 13:18:13 +0000 (22:18 +0900)]
Apply eosPThread to mrc2Dto3D, -pthread
Modify lmrcImageRhoFiltering
Modify x86Mac64.inc
Modify lmrcImageFFT for odd size images
Modify lmrcImageOperation(lmrcImageAdd) for speed up.
Takuo Yasunaga [Sun, 12 May 2013 19:16:15 +0000 (04:16 +0900)]
Create eosPThread for parallel computing
new file: include/eosPThread.h
new file: src/Objects/General/eosPThread/inc/eosPThread.h
new file: src/Objects/General/eosPThread/src/eosPThreadCreate.c
new file: src/Objects/General/eosPThread/src/eosPThreadInit.c
new file: src/Objects/General/eosPThread/src/eosPThreadJoin.c
new file: src/Objects/General/eosPThread/src/eosPThreadMutex.c
Apply eosPThread to mrc3Dto2D
modified: include/lmrc3Dto2D.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.h
modified: src/Tools/rec3d/mrc3Dto2D/Config/OptionControlFile
modified: src/Tools/rec3d/mrc3Dto2D/src/mrc3Dto2D.c
Modified
modified: src/Objects/DataManip/mrcImage/src/mrcImageWrite.c
** Append mode -> Write mode
modified: src/Objects/DataManip/transform/src/lFETOrientationSearchByFeatureAlignmentInitSet.c
** Apply arrayPCA version up
Takuo Yasunaga [Tue, 7 May 2013 20:01:07 +0000 (05:01 +0900)]
// Modify git command
modified: Makefile
// Create a new command for fitting between two 2D/3D objects using PCA
new file: mrcImageShapePCAFit
new file: src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.c
new file: src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.h
modified: src/Tools/mrcImage/mrcImageShapePCA/src/mrcImageShapePCA.c
// Modify Array for PCA. Add average information of each xi
modified: src/Objects/General/Array/inc/Array.h
modified: src/Objects/General/Array/src/arrayPCA.c
modified: src/Objects/General/Array/src/larray2mrc.c
// Modify Matrix3D for PCA. Add matrix3DfromArray
modified: src/Objects/General/Matrix3D/inc/Matrix3D.h
modified: src/Objects/General/Matrix3D/src/matrix3DEulerAngleGet.c
modified: src/Objects/General/Matrix3D/src/matrix3DUtil.c
// Modify pdbPCA for changing arrayPCA
modified: src/Tools/pdbUtil/pdbPCA/src/pdbPCA.c
// Bebuilding
modified: hostdepend/X86MAC64/...
Takuo Yasunaga [Sun, 5 May 2013 01:20:45 +0000 (10:20 +0900)]
Add hostdepend/X86MAC64
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.