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eos/hostdependX86MAC64.git
9 years agoRebuild
commit | commitdiff | tree
Takuo Yasunaga [Wed, 10 Jun 2015 12:31:50 +0000 (21:31 +0900)]
Rebuild
Bug fixed:

9 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Sun, 7 Jun 2015 20:47:50 +0000 (05:47 +0900)]
Bug fixed:
lmrcImageCopy

9 years agoModified:
commit | commitdiff | tree
Takuo Yasunaga [Sun, 7 Jun 2015 10:56:31 +0000 (19:56 +0900)]
Modified:
modified:   bin/X86MAC64/mrcImageShapeSearch
modified:   bin/X86MAC64/pdb2mrc2d

9 years ago modified: bin/X86MAC64/mrcImageAreaCalc
commit | commitdiff | tree
Takuo Yasunaga [Sat, 16 May 2015 00:37:33 +0000 (09:37 +0900)]
modified:   bin/X86MAC64/mrcImageAreaCalc
modified:   bin/X86MAC64/mrcImageLabeling

9 years ago modified: bin/X86MAC64/mrcImageAreaCalc
commit | commitdiff | tree
Takuo Yasunaga [Sat, 16 May 2015 00:06:03 +0000 (09:06 +0900)]
modified:   bin/X86MAC64/mrcImageAreaCalc
modified:   bin/X86MAC64/mrcImageLabeling

9 years ago modified: bin/X86MAC64/dmInfo
commit | commitdiff | tree
Takuo Yasunaga [Mon, 4 May 2015 13:00:30 +0000 (22:00 +0900)]
modified:   bin/X86MAC64/dmInfo

9 years agodmInfo: modified
commit | commitdiff | tree
Takuo Yasunaga [Mon, 4 May 2015 09:17:57 +0000 (18:17 +0900)]
dmInfo: modified
Bugfixed: YAML format

9 years agoModified: dmInfo
commit | commitdiff | tree
Takuo Yasunaga [Wed, 22 Apr 2015 09:31:00 +0000 (18:31 +0900)]
Modified: dmInfo
assign Array of UInt2 as String of UTF-16

9 years agoCreate a new tool:
commit | commitdiff | tree
Takuo Yasunaga [Tue, 21 Apr 2015 23:57:14 +0000 (08:57 +0900)]
Create a new tool:
    dmInfo

Modified a tool:
    mrcImageShapePCA

9 years agorebuid:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Apr 2015 21:14:54 +0000 (06:14 +0900)]
rebuid:
Add posgresql lib

9 years agoticket #35034
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Apr 2015 19:38:08 +0000 (04:38 +0900)]
ticket #35034
Sphere index, Disk index, Cylinder index
larger values indicate its shape.

9 years agoticket: #35034
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Apr 2015 06:48:32 +0000 (15:48 +0900)]
ticket:  #35034
mrcImageShapePCA
Add validation:

9 years agoticket: #35034
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Apr 2015 06:03:36 +0000 (15:03 +0900)]
ticket: #35034
mrcImageShapePCA
modified output file
LogS

9 years agoticket: #34999
commit | commitdiff | tree
Takuo Yasunaga [Mon, 23 Mar 2015 12:50:16 +0000 (21:50 +0900)]
ticket: #34999
  mrcImageAreaCalc
-OH and -H for histgram of area distribution

9 years agoticket: #35000
commit | commitdiff | tree
Takuo Yasunaga [Mon, 23 Mar 2015 09:59:20 +0000 (18:59 +0900)]
ticket: #35000
mrcImageAutoTriming
new tool
mrcImage.h

ticket: #35007
mrcImageInfo
Add sdOfAllAxis   -I -m 8　
lmrcImageInfo

ticket: #34997
mrcImageFreeMeanPathCalc
under construction

9 years agoticket #34993
commit | commitdiff | tree
Takuo Yasunaga [Wed, 18 Mar 2015 09:40:59 +0000 (18:40 +0900)]
ticket #34993
clusterLog
Binary

ticket #34996
mrcImagMeanFreePath
-lt

9 years agorebuid:
commit | commitdiff | tree
Takuo Yasunaga [Sun, 8 Mar 2015 10:14:51 +0000 (19:14 +0900)]
rebuid:
Some files were deleted, I do not know why ?

9 years agoticket: #34966
commit | commitdiff | tree
Takuo Yasunaga [Sun, 8 Mar 2015 02:00:51 +0000 (11:00 +0900)]
ticket: #34966
compilation error for openGL on OS-X
openGL -> eosOpenGL

ticket: #34967
ALSA-lib installation

rebuild:

9 years agoticket: #34564 and #34965
commit | commitdiff | tree
Takuo Yasunaga [Sat, 7 Mar 2015 15:48:48 +0000 (00:48 +0900)]
ticket: #34564 and #34965
new file:   util/X86MAC64/cuda
mrcImagePixelDataGet
ticket: #34964
mrcImageShapeSearch
Instable version

9 years agoticket: #34963 mrcImageMeanFreePath : pixel -> Angstrom : -m +16
commit | commitdiff | tree
Takuo Yasunaga [Sat, 7 Mar 2015 09:28:21 +0000 (18:28 +0900)]
ticket: #34963 mrcImageMeanFreePath : pixel -> Angstrom : -m +16

ticket: #34814 mrcImageShapeSearch : Cylinder search

9 years agoAdd libpng libzlib
commit | commitdiff | tree
Takuo Yasunaga [Thu, 5 Mar 2015 20:08:33 +0000 (05:08 +0900)]
Add libpng libzlib
Modified util/src/Graphics/Makefile

9 years agobugfixed: mrcImageMeanFreePathCalc
commit | commitdiff | tree
Takuo Yasunaga [Wed, 4 Mar 2015 00:02:38 +0000 (09:02 +0900)]
bugfixed: mrcImageMeanFreePathCalc

9 years agoAdd a tool: arrayPCA
commit | commitdiff | tree
Takuo Yasunaga [Tue, 3 Mar 2015 10:43:06 +0000 (19:43 +0900)]
Add a tool: arrayPCA

9 years ago modified: bin/X86MAC64/mrcImageModelCreate
commit | commitdiff | tree
Takuo Yasunaga [Sat, 28 Feb 2015 03:47:50 +0000 (12:47 +0900)]
modified:   bin/X86MAC64/mrcImageModelCreate
modified:   bin/X86MAC64/mrcImageShapePCA
modified:   bin/X86MAC64/pdbPCA
modified:   lib/X86MAC64/*

9 years agoPast missing commands was removed.
commit | commitdiff | tree
Takuo Yasunaga [Tue, 24 Feb 2015 08:47:04 +0000 (17:47 +0900)]
Past missing commands was removed.
Changes to be committed:
deleted:    bin/X86MAC64/geogeoge
deleted:    bin/X86MAC64/hidac2009
deleted:    bin/X86MAC64/hidac2010
deleted:    bin/X86MAC64/hidaka2009
deleted:    bin/X86MAC64/hiromi
deleted:    bin/X86MAC64/hiroshiImageProcessing
deleted:    bin/X86MAC64/itami
deleted:    bin/X86MAC64/kayabuki
deleted:    bin/X86MAC64/konson3
deleted:    bin/X86MAC64/kuma
deleted:    bin/X86MAC64/miho2
deleted:    bin/X86MAC64/rasmonyo
deleted:    bin/X86MAC64/reoleo
deleted:    bin/X86MAC64/ryuuhaku
deleted:    bin/X86MAC64/takahiro
deleted:    bin/X86MAC64/watanabe2009
deleted:    bin/X86MAC64/yajinori
deleted:    bin/X86MAC64/yamashita09
deleted:    bin/X86MAC64/yoshinori
deleted:    bin/X86MAC64/yoshio

9 years agoRebuild:
commit | commitdiff | tree
Takuo Yasunaga [Mon, 9 Feb 2015 23:09:40 +0000 (08:09 +0900)]
Rebuild:

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/hostdependX86MAC64
commit | commitdiff | tree
Takuo Yasunaga [Mon, 2 Feb 2015 07:59:46 +0000 (16:59 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/hostdependX86MAC64

Conflicts:
bin/X86MAC64/mrcImageBottomHatTransform
bin/X86MAC64/mrcImageClosing
bin/X86MAC64/mrcImageDilation
bin/X86MAC64/mrcImageErosion
bin/X86MAC64/mrcImageOpening
bin/X86MAC64/mrcImageTopHatTransform
include
lib/X86MAC64/libEosObjects.a
lib/X86MAC64/libctfInfo.a
lib/X86MAC64/libmrcImage.a
lib/X86MAC64/shared/lmrcImageMorphology.sharedo
lib/X86MAC64/shared/powerspectraTangentLine.sharedo
src/Tools/Cluster/clusterLog2ToLog/src/X86MAC64/.Depend
src/Tools/Cluster/clusterLogASCII2Binary/src/X86MAC64/.Depend
src/Tools/Cluster/clusterShow/src/X86MAC64/.Depend
src/Tools/Coord/coordRotation/src/X86MAC64/.Depend
src/Tools/Coord/pointsSetToPDB/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdCompareCA/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdFilePrint/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdInfo/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdSelectAtoms/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdSerectAtom/src/X86MAC64/.Depend
src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86MAC64/.Depend
src/Tools/Integration/Display2/src/X86MAC64/.Depend
src/Tools/Integration/StereoDisplay/src/X86MAC64/.Depend
src/Tools/Integration/ctfDisplay/src/X86MAC64/.Depend
src/Tools/Integration/imagesClustering/src/X86MAC64/.Depend
src/Tools/Integration/imagesView/src/X86MAC64/.Depend
src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfDetermine/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfEnvelopFunction/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfFunction/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfFunctionServer/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfInfoSet/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfMultiFunction/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfWeightMapCreation/src/X86MAC64/.Depend
src/Tools/ctfInfo/ctfZeroPoint/src/X86MAC64/.Depend
src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86MAC64/.Depend
src/Tools/ctfInfo/electronWaveLength/src/X86MAC64/.Depend
src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86MAC64/.Depend
src/Tools/ctfInfo/tiltInfoDetermine/src/X86MAC64/.Depend
src/Tools/eosPoint/eosPointProjector/src/X86MAC64/.Depend
src/Tools/eosPoint/eosPointRotation/src/X86MAC64/.Depend
src/Tools/filter/array2mrc/src/X86MAC64/.Depend
src/Tools/filter/bin2mrc/src/X86MAC64/.Depend
src/Tools/filter/bmp2mrc/src/X86MAC64/.Depend
src/Tools/filter/dm2mrc/src/X86MAC64/.Depend
src/Tools/filter/dmInfo/src/X86MAC64/.Depend
src/Tools/filter/dos2unix/src/X86MAC64/.Depend
src/Tools/filter/emData2mrc/src/X86MAC64/.Depend
src/Tools/filter/imodst2mrc/src/X86MAC64/.Depend
src/Tools/filter/ip2mrc/src/X86MAC64/.Depend
src/Tools/filter/moi2mrc/src/X86MAC64/.Depend
src/Tools/filter/mrc2fld/src/X86MAC64/.Depend
src/Tools/filter/mrc2gif/src/X86MAC64/.Depend
src/Tools/filter/mrc2lattice/src/X86MAC64/.Depend
src/Tools/filter/mrc2mrc/src/X86MAC64/.Depend
src/Tools/filter/mrc2pov/src/X86MAC64/.Depend
src/Tools/filter/mrc2tiff/src/X86MAC64/.Depend
src/Tools/filter/mrc2viff/src/X86MAC64/.Depend
src/Tools/filter/pdb2ucd/src/X86MAC64/.Depend
src/Tools/filter/tgaInfo/src/X86MAC64/.Depend
src/Tools/filter/tiff2mrc/src/X86MAC64/.Depend
src/Tools/hf2000/hf2000Init/src/X86MAC64/.Depend
src/Tools/hf2000/hf2000LenzCurrent/src/X86MAC64/.Depend
src/Tools/hf2000/hf2000SpecimenPosition/src/X86MAC64/.Depend
src/Tools/khorosTool/khorosFilterGenerate/src/X86MAC64/.Depend
src/Tools/largeIP/largeIPInfo/src/X86MAC64/.Depend
src/Tools/llData/llDataAverage/src/X86MAC64/.Depend
src/Tools/llData/llDataAxisSearch/src/X86MAC64/.Depend
src/Tools/llData/llDataCTFCompensate/src/X86MAC64/.Depend
src/Tools/llData/llDataCompare/src/X86MAC64/.Depend
src/Tools/llData/llDataContributionCalcDifferentN/src/X86MAC64/.Depend
src/Tools/llData/llDataDump/src/X86MAC64/.Depend
src/Tools/llData/llDataEquatorAdd/src/X86MAC64/.Depend
src/Tools/llData/llDataExtract/src/X86MAC64/.Depend
src/Tools/llData/llDataFit/src/X86MAC64/.Depend
src/Tools/llData/llDataFitServer/src/X86MAC64/.Depend
src/Tools/llData/llDataInfo/src/X86MAC64/.Depend
src/Tools/llData/llDataLowPassFiltering/src/X86MAC64/.Depend
src/Tools/llData/llDataMultiCTFCompensation/src/X86MAC64/.Depend
src/Tools/llData/llDataNEstimation/src/X86MAC64/.Depend
src/Tools/llData/llDataNormalization/src/X86MAC64/.Depend
src/Tools/llData/llDataPrint/src/X86MAC64/.Depend
src/Tools/llData/llDataRescaling/src/X86MAC64/.Depend
src/Tools/llData/llDataResolutionCheck/src/X86MAC64/.Depend
src/Tools/llData/llDataRotation/src/X86MAC64/.Depend
src/Tools/llData/llDataSelectionEstimation/src/X86MAC64/.Depend
src/Tools/llData/llDataSeparate/src/X86MAC64/.Depend
src/Tools/llData/llDataWeightSet/src/X86MAC64/.Depend
src/Tools/llData/llDatarMaxLimit/src/X86MAC64/.Depend
src/Tools/ltlgData/ltlgDataInfo/src/X86MAC64/.Depend
src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86MAC64/.Depend
src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86MAC64/.Depend
src/Tools/matrix3D/matrix3DInverse/src/X86MAC64/.Depend
src/Tools/matrix3D/matrix3DToEulerAngle/src/X86MAC64/.Depend
src/Tools/mrcImage/fft2d/src/X86MAC64/.Depend
src/Tools/mrcImage/mrc2dsn6/src/X86MAC64/.Depend
src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
src/Tools/mrcImage/mrc2map/src/X86MAC64/.Depend
src/Tools/mrcImage/mrc3DExtractZ/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTDigitize/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTExpression/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTFiltering/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTIQEstimation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTInfo/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTMedianFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTProjection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTResampling/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTSizeChange/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTSpectrum/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTXFiltering/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage1dCutAverage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage2DBackProjection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage2DProjection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage2pdb/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage3DPad2/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImage3DWindowing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAreaCalc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAsProbability/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoRotationAverage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBandPassFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBilateralFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBlockMerge/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/mrcImageBottomHatTransform
src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCenterGet/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/mrcImageClosing
src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageColoring/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageConnection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCoordinateChange/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCorrelationServer/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCrystalCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageCylinderSection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDensityInfo/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDensityNormalization/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/mrcImageDilation
src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDistanceConversion/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageDividedByFile/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageEdgeEnhancement/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/mrcImageErosion
src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageExpression/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFFT/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFOMCalc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFilamentSearch/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFilterCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageGaussDisc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageGaussSphere/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHeaderChange/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHelicalProjection/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHoughTransform/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageHoughTransformInverse/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageLabeling/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageMakeCylinder/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageMasking/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageModeChange/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageNoiseCreate/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImagePrint3D/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSmoothing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSphere/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSphereCheck/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSplit/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSquare/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageStack/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageStandardDeviation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageToneReversal/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/mrcImageTopHatTransform
src/Tools/mrcImage/mrcImageTrans/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTransformSign/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageTranspose/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageUnbentROI/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageUntwist/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageVolumeCalc/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageWindowing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImageZPad/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImagestoRef/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcInfoSet/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcMeanYlinePos/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcMirrorImageCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefCorEstimate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefCorModify/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefCoreGet/src/X86MAC64/.Depend
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src/Tools/mrcImage/mrcRefCorrelationConv/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefEstimate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefHeaderCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImageCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefImagexaFit/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefNoiseAdd/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefNormalizing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefSmoothing/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86MAC64/.Depend
src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/.Depend
src/Tools/openGL/gmolvie/src/X86MAC64/.Depend
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src/Tools/openGL/molvieDock/src/X86MAC64/.Depend
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src/Tools/openGL/molvieViewer/src/X86MAC64/.Depend
src/Tools/openGL/rasmonyo/src/X86MAC64/.Depend
src/Tools/pdbUtil/pdb2SketchMacro/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbDisplay/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbHomologySearch/src/X86MAC64/.Depend
src/Tools/pdbUtil/pdbInfo/src/X86MAC64/.Depend
src/Tools/pdbUtil/pdbListRMSDCalc/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbProteinIDSet/src/X86MAC64/.Depend
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src/Tools/pdbUtil/pdbTempFactorSet/src/X86MAC64/.Depend
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src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/X86MAC64/.Depend
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src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/.Depend
src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86MAC64/.Depend
src/Tools/rec3d/LCalculationForOrientationSearch/src/X86MAC64/.Depend
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src/Tools/rec3d/commonLinesSearchByVoting/src/X86MAC64/.Depend
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src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86MAC64/.Depend
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src/Tools/rec3d/ltlg2mrc/src/X86MAC64/.Depend
src/Tools/rec3d/ltlg2ps/src/X86MAC64/.Depend
src/Tools/rec3d/marker2Dto3DEstimator/src/X86MAC64/.Depend
src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/.Depend
src/Tools/rec3d/mrc2Dto3DforVariation/src/X86MAC64/.Depend
src/Tools/rec3d/mrc3Dto2D/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageOrientationSearch/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/.Depend
src/Tools/rec3d/mrcImageRadonTransform/src/X86MAC64/.Depend
src/Tools/rec3d/mrcRadon2Dto3D/src/X86MAC64/.Depend
src/Tools/simulation/energyTransferModelCheck/src/X86MAC64/.Depend
src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/.Depend
src/Tools/simulation/muscleSimulation/src/X86MAC64/.Depend
src/Tools/transform/Descartes2Polar/src/X86MAC64/.Depend
src/Tools/transform/Polar2Descartes/src/X86MAC64/.Depend
src/Tools/transform/pointAffineTransform/src/X86MAC64/.Depend
src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86MAC64/.Depend
util/X86MAC64/lib/libBLT.a
util/X86MAC64/lib/libBLTlite.a
util/X86MAC64/lib/libgif.4.dylib
util/X86MAC64/lib/libgif.dylib
util/X86MAC64/lib/libhdf5.dylib
util/X86MAC64/lib/libhdf5_hl.dylib
util/X86MAC64/lib/libtiff.dylib
util/X86MAC64/lib/libtiffxx.dylib

9 years agoMerge and split
commit | commitdiff | tree
Takuo Yasunaga [Mon, 2 Feb 2015 07:55:04 +0000 (16:55 +0900)]
Merge and split
new file:   bin/X86MAC64/*

9 years ago modified: .gitignore
commit | commitdiff | tree
Takuo Yasunaga [Sun, 25 Jan 2015 05:36:53 +0000 (14:36 +0900)]
modified:   .gitignore
modified:   Makefile

new file:   bin/mrcImageShapeSearch
modified:   include/lmrcImageMorphology.h
modified:   include/powerspectraTangentLine.h
modified:   src/Objects/DataManip/ctfInfo/src/lctfDetermination.c
modified:   src/Objects/DataManip/ctfInfo/src/powerspectraTangentLine.c
modified:   src/Objects/DataManip/ctfInfo/src/powerspectraTangentLine.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageClusterAnalysis.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.h
modified:   src/Objects/General/Cluster/inc/Cluster.h
modified:   src/Objects/General/Cluster/src/clusterLogWrite.c
modified:   src/Tools/Config/Define.inc
typechange: src/Tools/Makefile
new file:   src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/

9 years agostrdup bug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Thu, 15 Jan 2015 05:29:52 +0000 (14:29 +0900)]
strdup bug fixed:
  OS-X has some tools, such as strdup, as a inline-function.

  rebuild:

9 years agoNew Tool:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 10 Jan 2015 00:47:57 +0000 (09:47 +0900)]
New Tool:
new file:   bin/mrcImageMeanFreePathCalc

9 years agoupdated: mrcImageClusterAnalysis for pthread
commit | commitdiff | tree
Takuo Yasunaga [Sat, 3 Jan 2015 06:42:56 +0000 (15:42 +0900)]
updated: mrcImageClusterAnalysis for pthread

9 years agoUpdated: HoughTransform
commit | commitdiff | tree
Takuo Yasunaga [Tue, 30 Dec 2014 04:29:35 +0000 (13:29 +0900)]
Updated: HoughTransform

9 years agoNew tool: mrcImageHoughTransform, mrcImageHoughTransformInverse, mrcImageToneReversal
commit | commitdiff | tree
Takuo Yasunaga [Sun, 21 Dec 2014 17:31:08 +0000 (02:31 +0900)]
New tool: mrcImageHoughTransform, mrcImageHoughTransformInverse, mrcImageToneReversal

Rebuild:

9 years agoRecompiled: for 32bits to 64bits
commit | commitdiff | tree
Takuo Yasunaga [Sun, 30 Nov 2014 23:09:44 +0000 (08:09 +0900)]
Recompiled: for 32bits to 64bits

9 years agoModified: Makefile for update, All tools have been updated using make update.
commit | commitdiff | tree
Takuo Yasunaga [Sat, 22 Nov 2014 06:30:40 +0000 (15:30 +0900)]
Modified: Makefile for update, All tools have been updated using make update.
modified:   Makefile

9 years agomrcImageShrink: test
commit | commitdiff | tree
Takuo Yasunaga [Thu, 20 Nov 2014 22:32:43 +0000 (07:32 +0900)]
mrcImageShrink: test

Add libhdf5

9 years agorecompiled for cuda:
commit | commitdiff | tree
Takuo Yasunaga [Mon, 3 Nov 2014 03:08:27 +0000 (12:08 +0900)]
recompiled for cuda:

9 years agoMove test data from src/bin directories to data/.
commit | commitdiff | tree
Takuo Yasunaga [Mon, 3 Nov 2014 00:10:59 +0000 (09:10 +0900)]
Move test data from src/bin directories to data/.

9 years agoModified dotSourceInMakefileCreate:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 1 Nov 2014 00:42:15 +0000 (09:42 +0900)]
Modified dotSourceInMakefileCreate:
modified:   sbin/dotSourceInMakefileCreate
modified:   src/Config/Template/Makefile
modified:   src/Makefile
modified:   src/Objects/.Source.org

Recompiled:
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/Predicate-i.ri
deleted:    hostdepend/X86LINUX64/util/X86LINUX64/share/ri/1.9.1/system/REXML/Parsers/XPathParser/predicate-i.ri
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageCTFCompensationForTiltImage
modified:   hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/mrcImageCTFCompensationForTiltImage
modified:   src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified:   src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/mrcImageCTFCompensationForTiltImage.c

pione-dir: deleted
deleted:    pione

9 years agoBug fixed: No.34544: -o help meesage in mrcImageSpatialFrequencyFilter
commit | commitdiff | tree
kinoshita-eos [Mon, 27 Oct 2014 08:42:46 +0000 (17:42 +0900)]
Bug fixed: No.34544: -o help meesage in mrcImageSpatialFrequencyFilter
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageSpatialFrequencyFilter
modified:   src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/Config/OptionControlFile
typechange: src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/doc/Makefile
modified:   src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/mrcImageSpatialFrequencyFilter.html
modified:   src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/usage.c

9 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Mon, 27 Oct 2014 07:05:23 +0000 (16:05 +0900)]
Bug fixed:
modified:   Makefile
modified:   sbin/makegeneral
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSpatialFrequencyFilter.c
typechange: src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile

9 years ago modified: env/Eos_env
commit | commitdiff | tree
Takuo Yasunaga [Sun, 26 Oct 2014 00:21:48 +0000 (09:21 +0900)]
modified:   env/Eos_env
modified:   env/install-eos.sh

9 years agoAdd exp/gauss window: lmrcImageWindowing
commit | commitdiff | tree
Takuo Yasunaga [Sun, 19 Oct 2014 14:58:39 +0000 (23:58 +0900)]
Add exp/gauss window: lmrcImageWindowing
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.c

9 years agorebuild: for X86MAC64
commit | commitdiff | tree
Takuo Yasunaga [Sun, 19 Oct 2014 09:04:25 +0000 (18:04 +0900)]
rebuild: for X86MAC64

modified:   hostdepend/X86MAC64/*

9 years agoModified tools: mrcImageFourierNeighborCorrelation / mrcImageFourierShellCorrelation
commit | commitdiff | tree
Takuo Yasunaga [Sun, 19 Oct 2014 06:43:55 +0000 (15:43 +0900)]
Modified tools: mrcImageFourierNeighborCorrelation / mrcImageFourierShellCorrelation
Weighted Noise for mrcImageSpatialFrequencyFilter (Smoothing considering FSC)

modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierShellCorrelation.c
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/Config/OptionControlFile
typechange: src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/inc/mrcImageFourierNeighborCorrelation.h
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.c
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/test/Makefile
for testing:
modified:   src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/test/Makefile

Modified Tools: mrcInfo %ld -> %d
modified:   src/Objects/DataManip/mrcImage/src/mrcImagePrint.c

Under construction:
modified:   env/Eos_env
modified:   env/install-eos.sh
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.h

9 years agoModified: mrcImageNullImageCreate
commit | commitdiff | tree
Takuo Yasunaga [Wed, 15 Oct 2014 19:46:43 +0000 (04:46 +0900)]
Modified: mrcImageNullImageCreate
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageNullImageCreate
modified:   src/Tools/Config/Define.inc
typechange: src/Tools/mrcImage/Makefile
modified:   src/Tools/mrcImage/mrcImageNullImageCreate/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageNullImageCreate/src/mrcImageNullImageCreate.c

9 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 15 Oct 2014 18:39:17 +0000 (03:39 +0900)]
Bug fixed:
modified:   env/Eos_env

Under construction:
modified:   env/install-eos.sh

9 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Tue, 14 Oct 2014 10:47:57 +0000 (19:47 +0900)]
Bug fixed:
modified:   src/Objects/DataManip/mrcImage/src/mrcImagePrint.c
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.c

9 years agoModified Tools:
commit | commitdiff | tree
Takuo Yasunaga [Mon, 13 Oct 2014 08:47:44 +0000 (17:47 +0900)]
Modified Tools:
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageFourierNeighborCorrelation
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageMultiplyingbyFile
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageNoiseCreate
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFourierNeighborCorrelation.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMultiplying.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMultiplying.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageNoiseCreate.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageNoiseCreate.h
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.c
modified:   src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/mrcImageMultiplyingbyFile.c
modified:   src/Tools/mrcImage/mrcImageNoiseCreate/src/mrcImageNoiseCreate.c

9 years agoBug fixed: mrcImageSpatialFrequencyFilter
commit | commitdiff | tree
Takuo Yasunaga [Mon, 13 Oct 2014 00:38:14 +0000 (09:38 +0900)]
Bug fixed: mrcImageSpatialFrequencyFilter

9 years agoCreate a new tool: mrcImageSpatialFrequencyFilter
commit | commitdiff | tree
Takuo Yasunaga [Mon, 13 Oct 2014 00:17:39 +0000 (09:17 +0900)]
Create a new tool: mrcImageSpatialFrequencyFilter
new file:   bin/mrcImageSpatialFrequencyFilter

Modified tools: mrcImageFourierNeighborCorrelation, mrcImageFourierShellCorrelation
modified:   include/lmrcImageFourierNeighborCorrelation.h
modified:   include/lmrcImageFourierShellCorrelation.h
new file:   include/lmrcImageSpatialFrequencyFilter.h

9 years agoModified Tools: mrcImageMultiCTFCompensation
commit | commitdiff | tree
Takuo Yasunaga [Sun, 12 Oct 2014 06:42:34 +0000 (15:42 +0900)]
Modified Tools: mrcImageMultiCTFCompensation
modified:   src/Objects/DataManip/ctfInfo/inc/ctfInfo.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMultiCTFCompensation.c
modified:   src/Tools/mrcImage/mrcImageMultiCTFCompensation/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/mrcImageMultiCTFCompensation.c

9 years agoNew Tools:
commit | commitdiff | tree
Takuo Yasunaga [Sun, 12 Oct 2014 03:26:44 +0000 (12:26 +0900)]
New Tools:
new file:   bin/mrcImageFourierNeighborCorrelation

Modified Toos:
modified file:   bin/mrcImageFourierShellCorrelation

Incomplete, under construction:
new file:   bin/dmInfo

9 years ago modified: bin/wish/Display2/tclIndex
commit | commitdiff | tree
Takuo Yasunaga [Sat, 4 Oct 2014 18:01:01 +0000 (03:01 +0900)]
modified:   bin/wish/Display2/tclIndex
modified:   hostdepend/X86MAC64/bin/X86MAC64/*
modified:   hostdepend/X86MAC64/lib/X86MAC64/libEosObjects.a
modified:   hostdepend/X86MAC64/lib/X86MAC64/*

9 years agoModified mrcImageNormalizing: Add AssumeAsGaussian
commit | commitdiff | tree
Takuo Yasunaga [Fri, 3 Oct 2014 03:56:09 +0000 (12:56 +0900)]
Modified mrcImageNormalizing: Add AssumeAsGaussian
modified:   mrcImageNormalizing
modified:   include/lmrcImageNormalizing.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.h

9 years agoModified: Add usage related to -M
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Oct 2014 13:12:32 +0000 (22:12 +0900)]
Modified: Add usage related to -M
modified:   src/Objects/DataManip/bmpFile/inc/bmpFile.h
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c

9 years agoModified: bmp2mrc supported Y/R/G/B to mono of mrcImage, respecitively.
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Oct 2014 13:06:16 +0000 (22:06 +0900)]
Modified: bmp2mrc supported Y/R/G/B to mono of mrcImage, respecitively.
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c
modified:   src/Tools/filter/bmp2mrc/src/bmp2mrc.c

9 years agoAdd -thres for mrcImageAutoRotationAverage
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Oct 2014 11:53:17 +0000 (20:53 +0900)]
Add -thres for mrcImageAutoRotationAverage
modified:   mrcImageAutoRotationAverage
Add lmrcImageAverageOverThreshold
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.h

9 years agoCreate a new tool of mrcImageAutoRotationAverage:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 1 Oct 2014 11:09:10 +0000 (20:09 +0900)]
Create a new tool of mrcImageAutoRotationAverage:
new file:   mrcImageAutoRotationAverage
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageCorrelation.h
Input/Output separation of struct

9 years agoModifiy mrcImage3DPad: Filament/Sphere/Elliposiod/Rectangle
commit | commitdiff | tree
Takuo Yasunaga [Mon, 29 Sep 2014 10:35:58 +0000 (19:35 +0900)]
Modifiy mrcImage3DPad: Filament/Sphere/Elliposiod/Rectangle
modified:   include/lmrcImage3DPad.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImage3DPad.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImage3DPad.h
modified:   src/Tools/mrcImage/mrcImage3DPad/src/mrcImage3DPad.c

Modify genUtil.h

9 years agoname change eosPointTracker
commit | commitdiff | tree
Takuo Yasunaga [Sat, 13 Sep 2014 06:13:18 +0000 (15:13 +0900)]
name change eosPointTracker

9 years agoFunction Added
commit | commitdiff | tree
Takuo Yasunaga [Sat, 13 Sep 2014 06:06:43 +0000 (15:06 +0900)]
Function Added
new file:   eosPointProjector
Completed
modified:   marker2Dto3DEstimator
Not yet completed
modified:   src/Objects/General/eosPoint/inc/eosPoint.h
new file:   src/Objects/General/eosPoint/src/eosPointProject.c
modified:   src/Objects/General/eosPoint/src/eosPointRead.c
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

9 years agoBug fixed: ctrl2init0
commit | commitdiff | tree
Takuo Yasunaga [Fri, 12 Sep 2014 11:49:37 +0000 (13:49 +0200)]
Bug fixed: ctrl2init0
modified:   sbin/awk/ctrl2init0.awk

9 years agoBug-fixed:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 10 Sep 2014 09:24:34 +0000 (11:24 +0200)]
Bug-fixed:
lmrcImageCTFCompensation
-flagWin : Sine window

modified:   src/Objects/DataManip/mrcImage/src/lmrcImageCTFCompensation.c

9 years agoUsage Bugfixed: +8 -> 8
commit | commitdiff | tree
Takuo Yasunaga [Wed, 10 Sep 2014 09:14:32 +0000 (11:14 +0200)]
Usage Bugfixed: +8 -> 8
modified:   src/Tools/mrcImage/mrcFFTInfo/src/mrcFFTInfo.c

9 years agomrcFFTInfo: Function Added
commit | commitdiff | tree
Takuo Yasunaga [Wed, 10 Sep 2014 08:54:47 +0000 (10:54 +0200)]
mrcFFTInfo: Function Added
with nDivision and angle: mode 7
with SD : +32
with Log : +64

modified:   include/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcFFTInfo.c
modified:   src/Tools/mrcImage/mrcFFTInfo/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcFFTInfo/src/mrcFFTInfo.c

9 years agoTicke: #34276
commit | commitdiff | tree
Takuo Yasunaga [Thu, 4 Sep 2014 07:11:20 +0000 (16:11 +0900)]
Ticke: #34276

modified:   src/Tools/mrcImage/mrcImageSiemensStar/Config/OptionControlFile
typechange: src/Tools/mrcImage/mrcImageSiemensStar/Makefile
modified:   src/Tools/mrcImage/mrcImageSiemensStar/doc/Makefile
modified:   src/Tools/mrcImage/mrcImageSiemensStar/inc/mrcImageSiemensStar.h
modified:   src/Tools/mrcImage/mrcImageSiemensStar/src/mrcImageSiemensStar.c
modified:   src/Tools/mrcImage/mrcImageSiemensStar/src/test/Makefile

Not yet:
new file:   env/install-eos.sh
modified:   hostdepend/X86MAC64/src/Tools/Test/cufft/src/X86MAC64/.Depend
modified:   hostdepend/X86MAC64/src/Tools/Test/cufft/src/X86MAC64/Makefile

10 years agoWindow Functions were added.
commit | commitdiff | tree
Takuo Yasunaga [Mon, 11 Aug 2014 02:34:40 +0000 (11:34 +0900)]
Window Functions were added.
src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.c
src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.h
modified:   src/Tools/mrcImage/mrcImageWindowing/Config/OptionControlFile

10 years agolmrcImageMasking: Tools to Objects
commit | commitdiff | tree
Takuo Yasunaga [Sun, 10 Aug 2014 10:32:08 +0000 (19:32 +0900)]
lmrcImageMasking: Tools to Objects
modified:   mrcImageMasking
modified:   include/lmrcImageMasking.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMasking.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMasking.h
modified:   src/Tools/mrcImage/mrcImageMasking/src/mrcImageMasking.c

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 9 Aug 2014 20:53:07 +0000 (05:53 +0900)]
Bug fixed:
  mrcImageShapePCA
  When -C was not defined, wrong processing.

10 years agoAdd gnuplot as util/bin
commit | commitdiff | tree
Takuo Yasunaga [Tue, 5 Aug 2014 02:23:13 +0000 (11:23 +0900)]
Add gnuplot as util/bin
At present, we are trying to get utilities by wget/curl.

10 years agoModifiyed mrcImagePixelDataGet: -om (output mode)
commit | commitdiff | tree
Takuo Yasunaga [Tue, 5 Aug 2014 01:17:25 +0000 (10:17 +0900)]
Modifiyed mrcImagePixelDataGet: -om (output mode)
modified:   mrcImagePixelDataGet
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/src/mrcImagePixelDataGet.c

10 years agoAdd new filters for mrcImageSmoothing
commit | commitdiff | tree
Takuo Yasunaga [Mon, 4 Aug 2014 19:43:48 +0000 (04:43 +0900)]
Add new filters for mrcImageSmoothing
Edge and Line Weights Smoothing
Contrast sensitve weights smoothing
Gradient inverse weighted smoothing

modified:   mrcImageSmoothing
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSmoothing.c
modified:   src/Tools/mrcImage/mrcImageSmoothing/src/test/Makefile

Add new utils:
cmake
gdb
boost

10 years agoAdd a new command:
commit | commitdiff | tree
Takuo Yasunaga [Fri, 1 Aug 2014 21:06:17 +0000 (06:06 +0900)]
Add a new command:
new file:   mrcImageStack

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Thu, 31 Jul 2014 18:27:55 +0000 (03:27 +0900)]
Bug fixed:
Change lmrcImageDevidedByReal to lmrcImageDividedByReal.

modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Tools/mrcImage/mrcImage3DSymmetryFind/src/mrcImage3DSymmetryFind.c
modified:   src/Tools/mrcImage/mrcImageCorrelation/src/mrcImageCorrelation.c
modified:   src/Tools/mrcImage/mrcImageUnbentROI/src/mrcImageUnbentROI.c

Filename Changed
deleted:    src/Objects/DataManip/mrcImage/src/1
deleted:    src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c

10 years agoAdd new functions
commit | commitdiff | tree
Takuo Yasunaga [Thu, 31 Jul 2014 18:16:17 +0000 (03:16 +0900)]
Add new functions
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageEdgeEnhancement
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageSmoothing

modified:   include/lmrcImageEdgeEnhancement.h

  Add Negative Laplacian
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNegativeLaplacian.c

  Add Weighted Mean Filter
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSmoothing.c

10 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
commit | commitdiff | tree
Takuo Yasunaga [Tue, 29 Jul 2014 13:58:42 +0000 (22:58 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
bin/wish/Display2/tclIndex
src/Tools/mrcImage/Makefile

10 years agoAdd a new funciton and fixed bugs : mrcImageEdgeEnhancement
commit | commitdiff | tree
Takuo Yasunaga [Sat, 12 Jul 2014 13:35:06 +0000 (22:35 +0900)]
Add a new funciton and fixed bugs : mrcImageEdgeEnhancement
modified:   include/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageDifferential.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRoberts.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSobel.c
modified:   src/Tools/Config/Define.inc

10 years agomrcImageGetPixels for CUDA/No Cuda
commit | commitdiff | tree
Takuo Yasunaga [Mon, 7 Jul 2014 10:29:01 +0000 (19:29 +0900)]
mrcImageGetPixels for CUDA/No Cuda

modified:   include/mrcImage.h
new file:   include/mrcImageGetPixelsCUDA.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixels.c
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixelsCUDA.cu
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixelsCUDA.h
modified:   src/Tools/Config/Define.inc

mrcImagePixelDataGet for CUDA:
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/*

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Tue, 1 Jul 2014 02:57:36 +0000 (11:57 +0900)]
Bug fixed:
modified:   mrcImageInfo
modified:   src/Objects/DataManip/mrcImage/src/mrcImageInfo.c

10 years agoA new command : for floating. Previously, we have used mrcImagePad for floating
commit | commitdiff | tree
Takuo Yasunaga [Sat, 28 Jun 2014 04:39:24 +0000 (13:39 +0900)]
A new command : for floating. Previously, we have used mrcImagePad for floating
new file:   bin/mrcImageFloating
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageFloating.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageFloating.h
new file:   src/Tools/mrcImage/mrcImageFloating/*

10 years agoBug fixed for Color Images:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 25 Jun 2014 21:48:15 +0000 (06:48 +0900)]
Bug fixed for Color Images:
modified:   src/Objects/DataManip/bmpFile/src/bmpFileRead.c
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c
modified:   src/Tools/filter/bmp2mrc/src/test/Makefile

10 years agoAdd a new function:
commit | commitdiff | tree
Takuo Yasunaga [Wed, 25 Jun 2014 20:48:27 +0000 (05:48 +0900)]
Add a new function:
BMP File Format:
new file:   bin/bmp2mrc
new file:   bin/bmpFileInfo
new file:   include/bmpFile.h
new file:   src/Objects/DataManip/bmpFile/*
new file:   src/Objects/DataManip/bmpFile/inc/bmpFile.h
new file:   src/Objects/DataManip/bmpFile/src/bmpFileInfo.c
new file:   src/Objects/DataManip/bmpFile/src/bmpFileRead.c
new file:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c

new file:   src/Tools/bmpFile/
new file:   src/Tools/bmpFile/bmpFileInfo/*
new file:   src/Tools/filter/bmp2mrc/*

Modify Makefile to see gcc commands
modified:   src/Config/Template/ObjectsTemplate.Dir/src/ARCH/Makefile
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataManip/Makefile

Install ruby1.9.1
new file:   hostdepend/X86MAC64/util/X86MAC64/lib/ruby/1.9.1/*
new file:   hostdepend/X86MAC64/util/X86MAC64/share/ri/1.9.1/*

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Sun, 22 Jun 2014 22:28:47 +0000 (07:28 +0900)]
Bug fixed:

10 years agoCreate a new command for edge enhancement before edge detection
commit | commitdiff | tree
Takuo Yasunaga [Sun, 22 Jun 2014 15:03:48 +0000 (00:03 +0900)]
Create a new command for edge enhancement before edge detection
new file:   mrcImageEdgeEnhancement
modified:   lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageRoberts.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageSobel.c
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/mrcImage/mrcImageEdgeEnhancement/*

10 years agoCreate a new command:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 21 Jun 2014 09:18:51 +0000 (18:18 +0900)]
Create a new command:
new file:   bin/mrcImageDividedByFile
new file:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageDividedByFile
Bug fixed: Devided -> Divided : Spell-missing
modified:   include/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMontageCreate.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified:   src/Tools/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageDividedByFile/*

10 years agoCreate A new tool:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 21 Jun 2014 07:11:26 +0000 (16:11 +0900)]
Create A new tool:
new file:   bin/mrcImageLogicalOperation
new file:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageLogicalOperation
new file:   lmrcImageLogic.h
new file:   lmrcImageLogicalOperation.c
modified:   src/Tools/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageLogicalOperation/*
Config/Define.inc

10 years agoCreate New Tools:
commit | commitdiff | tree
Takuo Yasunaga [Sat, 21 Jun 2014 04:06:21 +0000 (13:06 +0900)]
Create New Tools:
new file:   mrcImageBottomHatTransform
new file:   mrcImageTopHatTransform
new file:   include/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageBottomHatTransform.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageTopHatTransform.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.h
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/Makefile

Under construction
modified:   include/lmrcImageMorphology.h
new file:   src/Tools/mrcImage/mrcImageEdgeEnhancement/*

10 years agoUnder construction.
commit | commitdiff | tree
Takuo Yasunaga [Fri, 20 Jun 2014 22:37:54 +0000 (07:37 +0900)]
Under construction.
modified:   hostdepend/X86MAC64/src/Tools/rec3d/marker2Dto3DEstimator/src/X86MAC64/marker2Dto3DEstimator
modified:   src/Tools/rec3d/marker2Dto3DEstimator/Config/OptionControlFile
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

10 years agoNew tools
commit | commitdiff | tree
Takuo Yasunaga [Wed, 11 Jun 2014 04:33:47 +0000 (13:33 +0900)]
New tools
new file:   bin/mrcImageAsProbability
new file:   bin/mrcImageDeconvolution

new file:   bin/marker2Dto3DEstimator

10 years agoAdd weighted Back-projection lmrc2Dto3D: -m 2
commit | commitdiff | tree
Takuo Yasunaga [Sun, 1 Jun 2014 06:38:42 +0000 (15:38 +0900)]
Add weighted Back-projection lmrc2Dto3D: -m 2
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c
modified:   src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Fri, 30 May 2014 02:59:29 +0000 (11:59 +0900)]
Bug fixed:
modified:   src/Tools/rec3d/mrcImageInverseRadonTransform/src/mrcImageInverseRadonTransform.c
Under construction:
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

10 years agoBug fixed:
commit | commitdiff | tree
Takuo Yasunaga [Mon, 26 May 2014 18:38:46 +0000 (03:38 +0900)]
Bug fixed:
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImagePad
modified:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageFFT.sharedo
modified:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageTriming.sharedo
new file:   hostdepend/X86MAC64/util/X86MAC64/cuda
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageTriming.c

10 years ago modified: env/Eos_env
commit | commitdiff | tree
Takuo Yasunaga [Mon, 26 May 2014 17:46:56 +0000 (02:46 +0900)]
modified:   env/Eos_env
modify util/HOSTDIR/bin
modified:   include/Matrix3D.h
modified:   include/eosPoint.h
modified:   include/genUtil.h
modified:   include/lmrcImageMasking.h
modified:   src/Objects/General/Matrix3D/inc/Matrix3D.h

modified:   src/Objects/General/Memory/inc/Memory.h
modified:   src/Objects/General/Memory/src/memoryAllocate.c
modified:   src/Objects/General/Memory/src/memoryByteSwap.c

new file:   src/Objects/General/eosFunc/*
Add a new object of eosFunc: Sync/Rect

modified:   src/Objects/General/eosPoint/*
Add eosPoint for maker
new file:   bin/eosPointRotation

new file:   src/Tools/rec3d/marker2Dto3DEstimator/*
Not yet completed

10 years ago modified: hostdepend/X86MAC64/*
commit | commitdiff | tree
Takuo Yasunaga [Sun, 18 May 2014 12:04:15 +0000 (21:04 +0900)]
modified:   hostdepend/X86MAC64/*
modified:   include/lmrc2Dto3D.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataExpress/eosRuby/src/Swig/mkmf.log
modified:   src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified:   src/Objects/General/eosCuda/src/eosCuda.cu
modified:   src/*/*/*/src/Makefile

10 years ago modified: hostdepend/X86MAC64/bin/X86MAC64/tiff2mrc
commit | commitdiff | tree
Takuo Yasunaga [Sun, 11 May 2014 22:36:46 +0000 (07:36 +0900)]
modified:   hostdepend/X86MAC64/bin/X86MAC64/tiff2mrc
modified:   hostdepend/X86MAC64/src/Tools/filter/tiff2mrc/src/X86MAC64/tiff2mrc
modified:   src/Config/x86Mac64.inc
deleted:    src/Objects/General/eosCuda/src/eosCuda.c

10 years ago new file: Integration/Tomography/Makefile.recent
commit | commitdiff | tree
Takuo Yasunaga [Sun, 11 May 2014 22:22:59 +0000 (07:22 +0900)]
new file:   Integration/Tomography/Makefile.recent
modified:   Makefile
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrc2tiff
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrc2gif
modified:   hostdepend/X86MAC64/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/mrc2Dto3D
added:      libtiff, libgif
added:      cuda
modified:   include/eosPThread.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/General/eosPThread/src/eosPThreadInit.c
modified:   src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified:   src/Tools/rec3d/mrc2Dto3D/Config/Define.inc
new file:   util/srcX86MAC64

10 years ago deleted: "\177"
commit | commitdiff | tree
Takuo Yasunaga [Mon, 28 Apr 2014 23:31:28 +0000 (08:31 +0900)]
deleted:    "\177"
deleted:    "\177\177"

10 years ago modified: Makefile
commit | commitdiff | tree
Takuo Yasunaga [Thu, 27 Feb 2014 20:00:25 +0000 (05:00 +0900)]
modified:   Makefile
modified:   bin/wish/ctfDisplay/ctfDisplay.wish
recompiled for X86MAC64:   hostdepend/X86MAC64/bin/X86MAC64/*
recompiled for X86MAC64:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageSummationCalculate.sharedo

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