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molby/Molby.git
2012-09-01 toshinagata1964Handling of view-related attributes of Molecule is...
2012-09-01 toshinagata1964Ruby documents for pi-anchors are written.
2012-08-30 toshinagata1964Pi-metal bonds are being implemented (molecular mechani...
2012-08-22 toshinagata1964Experimental feature: dummy atoms to represent pi-metal...
2012-08-20 toshinagata1964Some fields in md_arena were not properly copied when...
2012-08-20 toshinagata1964'Show Graphite' command was using wrong C-C bond length...
2012-08-12 toshinagata1964Some unused fields of Molecule were removed.
2012-08-12 toshinagata1964LAMatrix singular value decomposition was implemented.
2012-08-12 toshinagata1964Ruby: create_graphic was not working correctly when...
2012-08-04 toshinagata1964Loading multiple-frame mbsf sometimes fails to load...
2012-08-03 toshinagata1964Some cleanup of the internal structure; unused fields...
2012-08-02 toshinagata1964Property table can now list the unit cell parameters.
2012-08-02 toshinagata1964Documents for Dialog#show, Dialog#hide are written...
2012-07-26 toshinagata1964Cell minimization was not working correctly when no...
2012-07-25 toshinagata1964MDArena#prepare was not working correctly when unit...
2012-07-25 toshinagata1964Handling of selection from Ruby script was partially...
2012-07-24 toshinagata1964Best fit plane dialog was behaving strangely Fixed.
2012-07-24 toshinagata1964Handling of Molecule object was not consistent. Hopeful...
2012-07-24 toshinagata1964Export ORTEP (improved) and best-fit plane calculations...
2012-07-24 toshinagata1964The revision number is displayed in the about dialog...
2012-07-24 toshinagata1964Copy/paste of molecules was broken when it had atoms...
2012-07-20 toshinagata1964Documents for some missing Ruby methods are written.
2012-07-06 toshinagata1964Cell minimization is improved (hopefully...)
2012-07-05 toshinagata1964Remove printf() for debugging cell minimization
2012-07-05 toshinagata1964Implemented minimization of cell parameters. Looks...
2012-07-05 toshinagata1964Experimental: trying to implement minimizaion of cell...
2012-07-05 toshinagata1964Handling of flexible cells were still inconsistent.
2012-07-04 toshinagata1964Molecule#cell_flexibility and set_cell_flexibility...
2012-07-04 toshinagata1964Figures for the Ruby tutorial are added to the repository.
2012-07-04 toshinagata1964Handling of periodic box during MD is being reworked.
2012-07-04 toshinagata1964Ruby: Molecule#box= was not working as expected. Fixed.
2012-07-04 toshinagata1964Memory leak bugs are examined and removed.
2012-07-04 toshinagata1964amend_by_symmetry in MD was still broken. Hopefully...
2012-07-03 toshinagata1964Tutorial for the Ruby interpreter was (finally) written.
2012-07-03 toshinagata1964amend_by_symmetry during MD run was causing crash....
2012-07-02 toshinagata1964Graphite potential calculation is further modified...
2012-06-30 toshinagata1964When no molecule is open, Ruby scripts are evaluated...
2012-06-29 toshinagata1964Improving graphite potential calculation (hopefully...
2012-06-29 toshinagata1964Graphite potential calculation is improved.
2012-06-29 toshinagata1964The graphite potential calculation is being reworked.
2012-06-29 toshinagata1964The current working directory is set to the document...
2012-06-29 toshinagata1964The anisotropic parameters for the symmetry expanded...
2012-06-29 toshinagata1964Pressure control and surface potential are removed...
2012-06-28 toshinagata1964The load commands can now include error messages in...
2012-06-28 toshinagata1964MD minimize was not working properly (especially for...
2012-06-28 toshinagata1964Symmetry expansion in CIF import is improved. (May...
2012-06-27 toshinagata1964Molecule#expand_by_symmetry now returns an array of...
2012-06-27 toshinagata1964Molecule#symop_for_transform and transform_for_symop...
2012-06-26 toshinagata1964Molecule#is_atom_hidden and AtomRef#hidden, hidden...
2012-06-26 toshinagata1964Molecule#set/get_view_rotation: the sign of the angle...
2012-06-25 toshinagata1964The restriction on the number of bonds (12) is removed...
2012-06-22 toshinagata1964Include periodicity flags in the 'define unit cell...
2012-06-21 toshinagata1964Problem on guessing UFF angle parameter was fixed.
2012-06-21 toshinagata1964Fixed a very stupid bug in drawing unit cell.
2012-06-21 toshinagata1964Handling of frame-specific cell parameters was very...
2012-06-20 toshinagata1964Graphite potential in MM/MD gets recalculated much...
2012-06-20 toshinagata1964Building verlet list seems to be working. Handling...
2012-06-20 toshinagata1964Building verlet list is being reworked to implement...
2012-06-20 toshinagata1964Symmetry operations from the CIF file were not read...
2012-06-19 toshinagata1964Mac (only 10.6?): when the graphite display is on,...
2012-06-18 toshinagata1964Version 0.6.3
2012-06-18 toshinagata1964Features of Molecule#cell and Molecule#box are modified...
2012-06-18 toshinagata1964Mbsf format now retains anisotropic parameters and...
2012-06-18 toshinagata1964Crash during creating bonds when ellipsoid display...
2012-06-17 toshinagata1964Ruby: Molecule#fit_coordinates seems to be working...
2012-06-16 toshinagata1964Ruby: Molecule#fit_coordinates is being implemented...
2012-06-15 toshinagata1964LAMatrix#new, #zero, #submatrix now accept arguments...
2012-06-14 toshinagata1964MM forces are updated even after 'run(0)'
2012-06-14 toshinagata1964Load/save mbsf files were broken when atom type variant...
2012-06-13 toshinagata1964The order of parameters in cmd_edit_local_parameter_in_...
2012-06-07 toshinagata1964Molecule#transform, rotate, invert, etc. are now aware...
2012-06-06 toshinagata1964MoleculeGetTransformForSymop() and MoleculeGetSymopForT...
2012-06-06 toshinagata1964Ruby: AtomRef#symop can now be set from script.
2012-06-06 toshinagata1964Ruby: Molecule#amend_by_symmetry is implemented.
2012-06-04 toshinagata1964Ruby: Molecule#set(get)_view_translation is now obsolet...
2012-06-04 toshinagata1964Undoing change in revision 207 (forgot to commit differ...
2012-06-04 toshinagata1964The order of the anisotropic thermal parameters is...
2012-06-04 toshinagata1964Ruby: Molecule#hidden_atoms and Molecule#set_hidden_ato...
2012-05-09 toshinagata1964The order of columns for MD parameters in the bond...
2012-05-09 toshinagata1964UFF parameter guess is implemented.
2012-05-09 toshinagata1964Molecule.neutralize was not working correctly. Fixed...
2012-05-08 toshinagata1964Fix the position of load/unload global parameters dialog.
2012-05-08 toshinagata1964Windows version does not display last build date in...
2012-05-08 toshinagata1964MyAppCallback_lookupScriptMenu() is added to cmdtool_st...
2012-05-08 toshinagata1964Parameters now can be specified by using both explicit...
2012-05-08 toshinagata1964Parameter editing is under overhaul.
2012-05-07 toshinagata1964Handling of parameters are being improved, but still...
2012-05-07 toshinagata1964Handling of parameters is being reworked (still going on)
2012-05-07 toshinagata1964Restructure MolAction.c
2012-05-07 toshinagata1964Atom range specification for the vdw cutoff parameter...
2012-05-03 toshinagata1964LAMatrix.html was added to the repository.
2012-05-03 toshinagata1964Vector3D[] and Transform[] are modified to accept an...
2012-05-03 toshinagata1964Load Script Menu caused crash when no window is open...
2012-05-03 toshinagata1964Ruby: Kernel.lookup_menu is implemented.
2012-05-03 toshinagata1964LAMatrix.multiply was not working correctly when on...
2012-05-02 toshinagata1964Execute Script command was broken. Fixed.
2012-03-29 toshinagata1964CIF import may fail when _geom_bond_site_symmetry_1...
2012-03-01 toshinagata1964Figures for the document are added
2012-02-26 toshinagata1964Document was written for the collaboration with other...
2012-02-26 toshinagata1964.log and .out are both accepted as the extension of...
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