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[eos/base.git] / src / Tools / mrcImage / mrcImageSeriesNormalizing / src / mrcImageSeriesNormalizing.html

diff --git a/src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.html b/src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.html
index 4abd489..68f05c6 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.html
+++ b/src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.html
@@ -9,12 +9,15 @@
 Usage: mrcImageSeriesNormalizing
 Options:
     [-i[nput]            In                  (NULL      ).as(inFileList          ) ] :Essential :Input: name list of mrcImage
+    [-i[nput]w[eight]    Weight              (NULL      ).as(inFile              ) ] :Optional  :weight: list of 0 or 1 
     [-o[utput]           Out                 (NULL      ).as(outFileList         ) ] :Essential :Output: name list of mrcImage
     [-param[eters]       Param               (stdout    ).as(outFile             ) ] :Optional  :Output: Parameters
     [-Low[ValueArea]     thresOfLowValueArea (0.01      ).as(Real                ) ] :Optional  :LowValueArea: rate
     [-High[ValueArea]    thresOfHighValueArea(0.99      ).as(Real                ) ] :Optional  :HighValueArea: rate
     [-L[ow]              Low                 (0.1       ).as(Real                ) ] :Optional  :Low
     [-H[igh]             High                (0.9       ).as(Real                ) ] :Optional  :High
+    [-UseLH              UseLow              (1         ).as(Integer             ) 
+                         UseHigh             (1         ).as(Integer             ) ] :Optional  :Use Low and High
     [-Low[ValueArea]Exp  ALow                (1.0       ).as(Real                ) 
                          KLow                (0.1       ).as(Real                ) 
                          BLow                (1.0       ).as(Real                ) ] :Optional  :Alow * exp(-Klow * i) + Blow
@@ -25,7 +28,6 @@ Options:
     [-xtol               xtol                (1e-8      ).as(Real                ) ] :Optional  :xtol
     [-gtol               gtol                (1e-8      ).as(Real                ) ] :Optional  :gtol
     [-ftol               ftol                (0.0       ).as(Real                ) ] :Optional  :ftol
-    [-param[eter]o[out]  ParamOut            (stdout    ).as(outFile             ) ] :Optional  :parameterFile
     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
 ----- Additional Usage -----