OSDN Git Service

Stirng.h -> eosString.h v2.4.24p0375
authorTakuo Yasunaga <yasunaga@phys.kyutech.ac.jp>
Fri, 6 Jan 2023 01:28:14 +0000 (10:28 +0900)
committerTakuo Yasunaga <yasunaga@phys.kyutech.ac.jp>
Fri, 6 Jan 2023 01:28:14 +0000 (10:28 +0900)
commit4197b1c78c60270187635a66df233bed8c2c6d9f
tree0a13d1be08deb40b01689d2a6754d6c13559042c
parent8fbff1ae4ca4ad1af333631946a7b43cd78ff43a
Stirng.h -> eosString.h
Makefile changed: install dst

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 Changes to be committed:
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