OSDN Git Service
takahiro [Fri, 15 Apr 2016 06:24:32 +0000 (15:24 +0900)]
".all"s were deleted.
kinoshita-eos [Mon, 30 Mar 2015 06:11:35 +0000 (15:11 +0900)]
Add: PIONE tutorial for random.
new file: SampleCode/PIONE/Basic16/Input/1.txt
new file: SampleCode/PIONE/Basic16/Input/2.txt
new file: SampleCode/PIONE/Basic16/Input/3.txt
new file: SampleCode/PIONE/Basic16/Random.pione
kinoshita-eos [Fri, 27 Mar 2015 08:13:40 +0000 (17:13 +0900)]
Add: PIONE-PNML tutorial for Synchronization.
new file: SampleCode/PIONE-PNML/Basic11/Input/test1.in
new file: SampleCode/PIONE-PNML/Basic11/Input/test2.info
new file: SampleCode/PIONE-PNML/Basic11/Input/test3.in
new file: SampleCode/PIONE-PNML/Basic11/Input/test4.info
new file: SampleCode/PIONE-PNML/Basic11/Input/test5.in
new file: SampleCode/PIONE-PNML/Basic11/Synchro.md
new file: SampleCode/PIONE-PNML/Basic11/Synchro.pnml
kinoshita-eos [Fri, 27 Mar 2015 07:57:28 +0000 (16:57 +0900)]
Add: PIONE-PNML tutorial for parallel.
new file: SampleCode/PIONE-PNML/Basic10/Input/test1.in
new file: SampleCode/PIONE-PNML/Basic10/Input/test2.in
new file: SampleCode/PIONE-PNML/Basic10/Input/test3.in
new file: SampleCode/PIONE-PNML/Basic10/Input/test4.in
new file: SampleCode/PIONE-PNML/Basic10/Input/test5.in
new file: SampleCode/PIONE-PNML/Basic10/Parallel.md
new file: SampleCode/PIONE-PNML/Basic10/Parallel.pnml
kinoshita-eos [Fri, 27 Mar 2015 07:45:20 +0000 (16:45 +0900)]
Add: PIONE-PNML tutorial for output divide.
new file: SampleCode/PIONE-PNML/Basic9/OutputDivide.md
new file: SampleCode/PIONE-PNML/Basic9/OutputDivide.pnml
kinoshita-eos [Fri, 27 Mar 2015 07:34:55 +0000 (16:34 +0900)]
Add: PIONE-PNML tutorial Basic8 Input files.
new file: SampleCode/PIONE-PNML/Basic8/Input/test1.in
new file: SampleCode/PIONE-PNML/Basic8/Input/test2.info
new file: SampleCode/PIONE-PNML/Basic8/Input/test3.list
new file: SampleCode/PIONE-PNML/Basic8/Input/test4.in
new file: SampleCode/PIONE-PNML/Basic8/Input/test5.info
kinoshita-eos [Fri, 27 Mar 2015 07:25:56 +0000 (16:25 +0900)]
Add: PIONE-PNML tutorial for input combine.
new file: SampleCode/PIONE-PNML/Basic8/InputOr.md
new file: SampleCode/PIONE-PNML/Basic8/InputOr.pnml
kinoshita-eos [Fri, 27 Mar 2015 07:19:58 +0000 (16:19 +0900)]
Modify: PIONE-PNML tutorial Basic7.
modified: SampleCode/PIONE-PNML/Basic7/Random.pnml
kinoshita-eos [Fri, 27 Mar 2015 07:11:33 +0000 (16:11 +0900)]
Add: PIONE-PNML tutorial for random input.
new file: SampleCode/PIONE-PNML/Basic7/Input/test1.in
new file: SampleCode/PIONE-PNML/Basic7/Input/test2.in
new file: SampleCode/PIONE-PNML/Basic7/Input/test3.in
new file: SampleCode/PIONE-PNML/Basic7/Input/test4.in
new file: SampleCode/PIONE-PNML/Basic7/Input/test5.in
new file: SampleCode/PIONE-PNML/Basic7/Random.md
new file: SampleCode/PIONE-PNML/Basic7/Random.pnml
kinoshita-eos [Fri, 27 Mar 2015 02:54:42 +0000 (11:54 +0900)]
Add: PIONE-PNML tutorail for if case statement.
new file: SampleCode/PIONE-PNML/Basic5/Serial5-1.md
new file: SampleCode/PIONE-PNML/Basic5/Serial5-1.pnml
new file: SampleCode/PIONE-PNML/Basic5/Serial5-2.pnml
new file: SampleCode/PIONE-PNML/Basic5/Serial5-3.pnml
kinoshita-eos [Thu, 26 Mar 2015 08:09:38 +0000 (17:09 +0900)]
Add: PIONE tutorial for examples by null data.
new file: SampleCode/PIONE-PNML/Basic6/date.md
new file: SampleCode/PIONE-PNML/Basic6/date.pnml
new file: SampleCode/PIONE-PNML/Basic6/date2.md
new file: SampleCode/PIONE-PNML/Basic6/date2.pnml
new file: SampleCode/PIONE/Basic7/ForDebug2.pione
kinoshita-eos [Thu, 26 Mar 2015 02:08:00 +0000 (11:08 +0900)]
Modify: PIONE-PNML Basic2 to add comment statement.
modified: SampleCode/PIONE-PNML/Basic2/Serial2.pnml
kinoshita-eos [Thu, 26 Mar 2015 01:28:53 +0000 (10:28 +0900)]
Add: PIONE-PNML tutorial about parameter setting.
new file: SampleCode/PIONE-PNML/Basic4/Serial2-4.md
new file: SampleCode/PIONE-PNML/Basic4/Serial2-4.pnml
new file: SampleCode/PIONE-PNML/Basic4/SerialInput/test1.in
new file: SampleCode/PIONE-PNML/Basic4/SerialInput/test2.in
new file: SampleCode/PIONE-PNML/Basic4/SerialInput/test3.in
new file: SampleCode/PIONE-PNML/Basic4/SerialInput/test4.in
new file: SampleCode/PIONE-PNML/Basic4/SerialInput/test5.in
kinoshita-eos [Mon, 9 Mar 2015 09:00:33 +0000 (18:00 +0900)]
Add: Grouping point for clustering.
new file: 2DClustering/2DClustering1/GroupingPoint.pione
modified: SampleCode/PIONE/Advanced5/Main.pione
new file: SampleCode/PIONE/Advanced5/Main_ROI.pione
modified: SampleCode/PIONE/Advanced5/Main_ROIr.pione
kinoshita-eos [Mon, 2 Mar 2015 01:28:15 +0000 (10:28 +0900)]
Modify: PIONE tutorial Advanced5
modified: SampleCode/PIONE/Advanced5/Main.pione
kinoshita-eos [Fri, 27 Feb 2015 05:31:52 +0000 (14:31 +0900)]
Add: PIONE tutorial for Clustering.
new file: SampleCode/PIONE/Advanced5/Main.pione
new file: SampleCode/PIONE/Advanced5/Main_ROIr.pione
kinoshita-eos [Mon, 16 Feb 2015 01:59:47 +0000 (10:59 +0900)]
Add: PIONE tutorial to repeat for Single Particle Makefile.
modified: SampleCode/PIONE/Advanced4/Anotation.pione
modified: SampleCode/PIONE/Advanced4/Create_3d.pione
modified: SampleCode/PIONE/Advanced4/Create_SampleROI.pione
modified: SampleCode/PIONE/Advanced4/Create_fit_each.pione
modified: SampleCode/PIONE/Advanced4/Create_stack.pione
modified: SampleCode/PIONE/Advanced4/Main.pione
modified: SampleCode/PIONE/Advanced4/Parameter.pione
new file: SampleCode/PIONE/Advanced4/Repeat_3d.pione
kinoshita-eos [Thu, 5 Feb 2015 05:24:02 +0000 (14:24 +0900)]
Add: PIONE tutorial Advanced4 new version.
modified: SampleCode/PIONE/Advanced4/Anotation.pione
modified: SampleCode/PIONE/Advanced4/Create_3d.pione
modified: SampleCode/PIONE/Advanced4/Create_3d4s.pione
deleted: SampleCode/PIONE/Advanced4/Create_3d4slst.pione
deleted: SampleCode/PIONE/Advanced4/Create_3dlst.pione
modified: SampleCode/PIONE/Advanced4/Create_3dwhole.pione
deleted: SampleCode/PIONE/Advanced4/Create_3dwholelst.pione
deleted: SampleCode/PIONE/Advanced4/Create_fit.pione
new file: SampleCode/PIONE/Advanced4/Create_fit_3d_all.pione
new file: SampleCode/PIONE/Advanced4/Create_fit_each.pione
modified: SampleCode/PIONE/Advanced4/Create_stack.pione
modified: SampleCode/PIONE/Advanced4/Main.pione
modified: SampleCode/PIONE/Advanced4/Parameter.pione
modified: SampleCode/PIONE/Advanced4/Preprocess.pione
Modify: Bug fixed: Basic7
modified: SampleCode/PIONE/Basic7/ForDebug.pione
kinoshita-eos [Tue, 3 Feb 2015 00:40:14 +0000 (09:40 +0900)]
Add: PIONE tutorial to compare a combined rule.
new file: SampleCode/PIONE/Basic5/Serial2_combine.pione
kinoshita-eos [Fri, 30 Jan 2015 04:51:48 +0000 (13:51 +0900)]
Modify: PIONE tutoirial Advanced4 version up.
modified: SampleCode/PIONE/Advanced4/Anotation.pione
kinoshita-eos [Fri, 30 Jan 2015 04:48:21 +0000 (13:48 +0900)]
Modify: Bug-Fixed PIONE tutorial Advanced4
modified: SampleCode/PIONE/Advanced4/Create_Sample3d.pione
Add: PIONE tutorial to compare "each" with "all".
new file: SampleCode/PIONE/Basic4/SizeOut1.pione
new file: SampleCode/PIONE/Basic4/SizeOut2.pione
new file: SampleCode/PIONE/Basic4/SizeOut3.pione
new file: SampleCode/PIONE/Basic4/SizeOut4.pione
kinoshita-eos [Wed, 28 Jan 2015 08:20:32 +0000 (17:20 +0900)]
Add: PIONE tutorial about Loop statement.
new file: SampleCode/PIONE/Basic15/EvenOddLoop4.pione
kinoshita-eos [Wed, 28 Jan 2015 06:25:53 +0000 (15:25 +0900)]
Modify: Bug Fixed: Advanced4
modified: SampleCode/PIONE/Advanced4/Create_3d4slst.pione
kinoshita-eos [Wed, 28 Jan 2015 05:24:30 +0000 (14:24 +0900)]
Modify: update Anotation.
modified: SampleCode/PIONE/Advanced4/Anotation.pione
kinoshita-eos [Wed, 28 Jan 2015 05:19:21 +0000 (14:19 +0900)]
Modify: PIONE tutorial Advanced4 use "each" and "all".
modified: SampleCode/PIONE/Advanced4/Create_3d4slst.pione
modified: SampleCode/PIONE/Advanced4/Create_3dlst.pione
modified: SampleCode/PIONE/Advanced4/Create_3dwholelst.pione
new file: SampleCode/PIONE/Advanced4/Create_Sample3d.pione
modified: SampleCode/PIONE/Advanced4/Create_SampleROI.pione
modified: SampleCode/PIONE/Advanced4/Create_fit.pione
modified: SampleCode/PIONE/Advanced4/Main.pione
modified: SampleCode/PIONE/Advanced4/Parameter.pione
modified: SampleCode/PIONE/Advanced4/Preprocess.pione
kinoshita-eos [Tue, 27 Jan 2015 08:47:51 +0000 (17:47 +0900)]
Add: PIONE tutorial to convert from Makefile.
new file: SampleCode/PIONE/Advanced4/Anotation.pione
new file: SampleCode/PIONE/Advanced4/Create_3d.pione
new file: SampleCode/PIONE/Advanced4/Create_3d4s.pione
new file: SampleCode/PIONE/Advanced4/Create_3d4slst.pione
new file: SampleCode/PIONE/Advanced4/Create_3dlst.pione
new file: SampleCode/PIONE/Advanced4/Create_3dwhole.pione
new file: SampleCode/PIONE/Advanced4/Create_3dwholelst.pione
new file: SampleCode/PIONE/Advanced4/Create_SampleROI.pione
new file: SampleCode/PIONE/Advanced4/Create_fit.pione
new file: SampleCode/PIONE/Advanced4/Create_stack.pione
new file: SampleCode/PIONE/Advanced4/Main.pione
new file: SampleCode/PIONE/Advanced4/Parameter.pione
new file: SampleCode/PIONE/Advanced4/Preprocess.pione
new file: SampleCode/PIONE/Advanced4/Projection_3d.pione
kinoshita-eos [Thu, 22 Jan 2015 03:02:42 +0000 (12:02 +0900)]
Modify: PIONE tutorial of Loop Statement version-up with upto.
modified: SampleCode/PIONE/Advanced3/Annotation.pione
modified: SampleCode/PIONE/Advanced3/Ref3DtoRef2D.pione
kinoshita-eos [Thu, 22 Jan 2015 02:03:07 +0000 (11:03 +0900)]
Add: PIONE tutorial of Loop statement with upto.
new file: SampleCode/PIONE/Basic15/EvenOddLoop3.pione
new file: SampleCode/PIONE/Basic15/LoopTouch5.pione
new file: SampleCode/PIONE/Basic15/LoopTouch6.pione
kinoshita-eos [Thu, 22 Jan 2015 00:50:55 +0000 (09:50 +0900)]
Add: PIONE tutorial of Loop Statement with constraint or sequence.
new file: SampleCode/PIONE/Basic11/EvenOddLoop3.pione
new file: SampleCode/PIONE/Basic11/LoopTouch3.pione
new file: SampleCode/PIONE/Basic11/LoopTouch4.pione
Add: PIONE tutorial of if Statement for Debug.
new file: SampleCode/PIONE/Basic7/ForDebug.pione
new file: SampleCode/PIONE/Basic7/input/1.txt
new file: SampleCode/PIONE/Basic7/input/2.txt
kinoshita-eos [Mon, 19 Jan 2015 01:54:33 +0000 (10:54 +0900)]
Add: PIONE tutorial about exceptions.
new file: SampleCode/PIONE/Basic14/TextInfo.pione
new file: SampleCode/PIONE/Basic14/TextInfoInput/1.txt
new file: SampleCode/PIONE/Basic14/TextInfoInput/2.txt
new file: SampleCode/PIONE/Basic14/TextInfoInput/3.txt
kinoshita-eos [Fri, 16 Jan 2015 06:34:28 +0000 (15:34 +0900)]
Add: PIONE tutorial about Except of DataExpr.
new file: SampleCode/PIONE/Basic14/DivideText.pione
new file: SampleCode/PIONE/Basic14/DivideTextInput/AllData.txt
kinoshita-eos [Fri, 16 Jan 2015 06:31:50 +0000 (15:31 +0900)]
Add: PIONE tutorial Ticket to Advanced3.
new file: SampleCode/PIONE/Advanced3plus1/Annotation.pione
new file: SampleCode/PIONE/Advanced3plus1/Main.pione
kinoshita-eos [Fri, 16 Jan 2015 00:29:17 +0000 (09:29 +0900)]
Add: PIONE tutorial about Sequence Method(or).
new file: SampleCode/PIONE/Basic13/Input/2.txt
new file: SampleCode/PIONE/Basic13/InputOr.pione
new file: SampleCode/PIONE/Basic13/OutputOr.pione
kinoshita-eos [Wed, 14 Jan 2015 02:07:58 +0000 (11:07 +0900)]
Add: PIONE tutorial about constraint.
new file: SampleCode/PIONE/Basic7/EvenOdd3.pione
kinoshita-eos [Wed, 14 Jan 2015 01:58:53 +0000 (10:58 +0900)]
Add: PIONE tutorial about Ticket.
new file: SampleCode/PIONE/Basic12/CreateList-instant.pione
new file: SampleCode/PIONE/Basic12/CreateList-ticket.pione
new file: SampleCode/PIONE/Basic12/CreateList-ticket2.pione
new file: SampleCode/PIONE/Basic12/input/1.data
new file: SampleCode/PIONE/Basic12/input/2.data
kinoshita-eos [Tue, 13 Jan 2015 01:11:41 +0000 (10:11 +0900)]
Add: PIONE tuotial for Loop Statement.
new file: SampleCode/PIONE/Basic11/EvenOddLoop2.pione
modified: SampleCode/PIONE/Basic11/LoopTouch.pione
modified: SampleCode/PIONE/Basic11/LoopTouch2.pione
kinoshita-eos [Fri, 9 Jan 2015 06:46:46 +0000 (15:46 +0900)]
Add: PIONE tutorial to improve Loop Statement.
new file: SampleCode/PIONE/Basic11/LoopTouch.pione
new file: SampleCode/PIONE/Basic11/LoopTouch2.pione
kinoshita-eos [Thu, 8 Jan 2015 01:31:56 +0000 (10:31 +0900)]
Modify: Summarize 2 CGI Files.
modified: SampleCode/PIONE/Advanced3/Annotation.pione
renamed: SampleCode/PIONE/Advanced3/bin/Finish.cgi -> SampleCode/PIONE/Advanced3/bin/Result.cgi
deleted: SampleCode/PIONE/Advanced3/bin/Retry.cgi
modified: SampleCode/PIONE/Advanced3/etc/index2.html
kinoshita-eos [Wed, 7 Jan 2015 10:02:52 +0000 (19:02 +0900)]
Add: PIONE tutorial to create ref2d file.
new file: SampleCode/PIONE/Advanced3/Annotation.pione
new file: SampleCode/PIONE/Advanced3/Interaction.pione
new file: SampleCode/PIONE/Advanced3/Main.pione
new file: SampleCode/PIONE/Advanced3/Ref3DtoRef2D.pione
new file: SampleCode/PIONE/Advanced3/Result.pione
new file: SampleCode/PIONE/Advanced3/bin/Finish.cgi
new file: SampleCode/PIONE/Advanced3/bin/Ref3DtoRef2D.cgi
new file: SampleCode/PIONE/Advanced3/bin/Retry.cgi
new file: SampleCode/PIONE/Advanced3/etc/Ref3DtoRef2D.html
new file: SampleCode/PIONE/Advanced3/etc/index.html
new file: SampleCode/PIONE/Advanced3/etc/index2.html
kinoshita-eos [Mon, 5 Jan 2015 02:46:09 +0000 (11:46 +0900)]
Add: PIONE tutorial for Loop
new file: SampleCode/PIONE/Basic10/EvenOddLoop.pione
kinoshita-eos [Fri, 19 Dec 2014 04:39:38 +0000 (13:39 +0900)]
Modify: PIONE tutorial Package6: Define Parameter Mode.
renamed: SampleCode/PIONE/Package6/Annotation3.0.pione -> SampleCode/PIONE/Package6/Annotation3.pione
modified: SampleCode/PIONE/Package6/Final3.pione
new file: SampleCode/PIONE/Package6/Param.pione
Add: PIONE tutorial Package7: About Scenario.
new file: SampleCode/PIONE/Package7/1VOM-m1/Scenario.pione
new file: SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc
new file: SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi
new file: SampleCode/PIONE/Package7/Annotation4.pione
new file: SampleCode/PIONE/Package7/Param.pione
kinoshita-eos [Wed, 17 Dec 2014 06:56:37 +0000 (15:56 +0900)]
Add: For example about pione package add
new file: SampleCode/PIONE/Basic6/Annotation.pione
new file: SampleCode/PIONE/Basic6/pione-package.json
kinoshita-eos [Tue, 16 Dec 2014 08:44:53 +0000 (17:44 +0900)]
Add: For PIONE tutorial Advanced2, support for delete a needless file.
modified: SampleCode/PIONE/Advanced2/Annotation.pione
new file: SampleCode/PIONE/Advanced2/bin/FileDelete.cgi
new file: SampleCode/PIONE/Advanced2/etc/FileDelete.html
modified: SampleCode/PIONE/Advanced2/etc/index.html
modified: SampleCode/PIONE/Advanced2/etc/mrcImageLowPassFilter.html
kinoshita-eos [Tue, 16 Dec 2014 05:54:03 +0000 (14:54 +0900)]
Add: tutorial for PIONE about Interaction API.
new file: SampleCode/PIONE/Basic9/Annotation.pione
new file: SampleCode/PIONE/Basic9/Interaction.pione
new file: SampleCode/PIONE/Basic9/Main.pione
new file: SampleCode/PIONE/Basic9/bin/list.cgi
new file: SampleCode/PIONE/Basic9/etc/Index.html
kinoshita-eos [Fri, 5 Dec 2014 05:03:08 +0000 (14:03 +0900)]
Add: tutorial for mrcImageLowPassFilter as PIONE-WebClient.
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/Annotation.pione
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/Interaction.pione
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/LowPassFilter(Kinoshita)+v0.1.1.ppg
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/Main.pione
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/bin/EosCommandSelect.cgi
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/bin/Result-mrcImageLowPassFilter.cgi
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/bin/Set-mrcImageLowPassFilter.cgi
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/etc/index.html
new file: SmallTools/mrcImage/mrcImageLowPassFilter/PIONE-WebClient/pione-package.json
kinoshita-eos [Fri, 5 Dec 2014 04:16:23 +0000 (13:16 +0900)]
Modify: Change dirctory name, because it inclides space.
renamed: Small Tools/Display2/Input-121p-shiftr.2d -> SmallTools/Display2/Input-121p-shiftr.2d
renamed: Small Tools/Display2/Input-1VOM-N-2D.mrc -> SmallTools/Display2/Input-1VOM-N-2D.mrc
renamed: Small Tools/Template/Makefile/Makefile -> SmallTools/Template/Makefile/Makefile
renamed: Small Tools/Template/Makefile/Makefile-lib -> SmallTools/Template/Makefile/Makefile-lib
renamed: Small Tools/ctfDisplay/example.fft -> SmallTools/ctfDisplay/example.fft
renamed: Small Tools/ctfDisplay/example.mrc -> SmallTools/ctfDisplay/example.mrc
renamed: Small Tools/mrcImage/Makefile -> SmallTools/mrcImage/Makefile
renamed: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile -> SmallTools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
renamed: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib -> SmallTools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
renamed: Small Tools/mrcImage/mrcImageROI3D/Makefile/Makefile -> SmallTools/mrcImage/mrcImageROI3D/Makefile/Makefile
renamed: Small Tools/mrcImage/mrcImageROI3D/Makefile/Makefile-lib -> SmallTools/mrcImage/mrcImageROI3D/Makefile/Makefile-lib
renamed: Small Tools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile -> SmallTools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile
renamed: Small Tools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile-lib -> SmallTools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile-lib
renamed: Small Tools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile -> SmallTools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile
renamed: Small Tools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile-lib -> SmallTools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile-lib
modified: TIPS/LoopCommand/Makefile/Makefile
modified: TIPS/LoopCommand/Makefile/Makefile-lib
modified: TIPS/Makefile
kinoshita-eos [Wed, 3 Dec 2014 08:35:14 +0000 (17:35 +0900)]
Add: toturial for PIONE advanced2 about interactive
new file: SampleCode/PIONE/Advanced2/Annotation.pione
new file: SampleCode/PIONE/Advanced2/Interaction.pione
new file: SampleCode/PIONE/Advanced2/Main.pione
new file: SampleCode/PIONE/Advanced2/bin/mrcImageLowPassFilter.cgi
new file: SampleCode/PIONE/Advanced2/etc/index.html
new file: SampleCode/PIONE/Advanced2/etc/mrcImageLowPassFilter.html
new file: SampleData/1VOM-N.2d
kinoshita-eos [Wed, 3 Dec 2014 00:12:45 +0000 (09:12 +0900)]
Add: tutorial for PIONE about case statement.
new file: SampleCode/PIONE/Basic7/EvenOdd2.pione
kinoshita-eos [Wed, 3 Dec 2014 00:00:11 +0000 (09:00 +0900)]
Modify: Bug Fixed
modified: SampleCode/PIONE-PNML/Basic5/Serial5.md
Add: tutorial for PIONE about Interaction
new file: SampleCode/PIONE/Basic8/Annotation1.0.pione
new file: SampleCode/PIONE/Basic8/InteractiveCalc.pione
new file: SampleCode/PIONE/Basic8/InteractiveCalcInput/test1.in
new file: SampleCode/PIONE/Basic8/InteractiveCalcInput/test2.in
new file: SampleCode/PIONE/Basic8/InteractiveCalcInput/test3.in
new file: SampleCode/PIONE/Basic8/InteractiveCalcInput/test4.in
new file: SampleCode/PIONE/Basic8/InteractiveCalcInput/test5.in
new file: SampleCode/PIONE/Basic8/bin/FileCalc.cgi
new file: SampleCode/PIONE/Basic8/etc/index.html
new file: SampleCode/PIONE/Packages/InteractiveCalc(Kinoshita)+v0.1.0.ppg
kinoshita-eos [Mon, 1 Dec 2014 00:44:38 +0000 (09:44 +0900)]
Add: tutorial for PIONE-PNML about if-statement.
new file: SampleCode/PIONE-PNML/Basic5/Serial5.md
new file: SampleCode/PIONE-PNML/Basic5/Serial5.pnml
new file: SampleCode/PIONE-PNML/Basic5/SerialInput/test1.in
new file: SampleCode/PIONE-PNML/Basic5/SerialInput/test2.in
new file: SampleCode/PIONE-PNML/Basic5/SerialInput/test3.in
new file: SampleCode/PIONE-PNML/Basic5/SerialInput/test4.in
new file: SampleCode/PIONE-PNML/Basic5/SerialInput/test5.in
kinoshita-eos [Fri, 28 Nov 2014 01:43:56 +0000 (10:43 +0900)]
Modify: Add Default Setting to Advanced tutorial for PIONE
modified: SampleCode/PIONE/Advanced1/CenterGet.pione
kinoshita-eos [Thu, 27 Nov 2014 08:08:03 +0000 (17:08 +0900)]
Add: tutorial for PIONE about Parameter Setting
new file: SampleCode/PIONE/Basic6/ParamEcho.pione
kinoshita-eos [Thu, 27 Nov 2014 06:50:34 +0000 (15:50 +0900)]
Add: tutorial for PIONE about Control statement
new file: SampleCode/PIONE/Basic7/EvenOdd.pione
kinoshita-eos [Tue, 25 Nov 2014 03:09:25 +0000 (12:09 +0900)]
Modify: tutorial for PIONE
new file: SampleCode/PIONE/Package5/Initial2.pione
new file: SampleCode/PIONE/Package6/Annotation3.0.pione
new file: SampleCode/PIONE/Package6/Final3.pione
Modify: Add Help Message for lib.
modified: Small Tools/Template/Makefile/Makefile
Add: tutorial for mrcImageRandomParticlesImageCreate
new file: Small Tools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile
new file: Small Tools/mrcImage/mrcImageRandomParticlesImageCreate/Makefile/Makefile-lib
kinoshita-eos [Fri, 21 Nov 2014 08:11:50 +0000 (17:11 +0900)]
Add: tutorial5 for PIONE package
new file: SampleCode/PIONE/Package5/Annotation2.0.pione
kinoshita-eos [Thu, 20 Nov 2014 05:30:59 +0000 (14:30 +0900)]
Modify: tutorial3 for PIONE-package(About Creating Annotation File)
new file: SampleCode/PIONE/Package3/Annotation.pione
modified: SampleCode/PIONE/Package3/Main.pione
deleted: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.3.ppg
new file: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.4.ppg
Add: tutorail4 for PIONE-package
new file: SampleCode/PIONE/Package4/Annotation1.0.pione
new file: SampleCode/PIONE/Package4/Initial2.pione
new file: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.1.0.ppg
kinoshita-eos [Thu, 20 Nov 2014 01:55:50 +0000 (10:55 +0900)]
Modify: Summarize annotations.
modified: SampleCode/PIONE/Package3/Final.pione
modified: SampleCode/PIONE/Package3/First.pione
modified: SampleCode/PIONE/Package3/Initial.pione
modified: SampleCode/PIONE/Package3/Main.pione
modified: SampleCode/PIONE/Package3/Second.pione
deleted: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.2.ppg
new file: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.3.ppg
kinoshita-eos [Thu, 20 Nov 2014 01:22:27 +0000 (10:22 +0900)]
Delete: Unnecessary file for tutorial.
deleted: SampleCode/PIONE/Package2/pione-package.json
Modify: PIONE tutorial ver. without source Eos_env
modified: SampleCode/PIONE/Package3/Final.pione
modified: SampleCode/PIONE/Package3/First.pione
modified: SampleCode/PIONE/Package3/Initial.pione
modified: SampleCode/PIONE/Package3/Main.pione
modified: SampleCode/PIONE/Package3/Second.pione
deleted: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.1.ppg
new file: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.2.ppg
kinoshita-eos [Wed, 19 Nov 2014 08:53:09 +0000 (17:53 +0900)]
Add: tutorial for PIONE Package.
new file: SampleCode/PIONE/Package2/pione-package.json
new file: SampleCode/PIONE/Package3/Final.pione
new file: SampleCode/PIONE/Package3/First.pione
new file: SampleCode/PIONE/Package3/Initial.pione
new file: SampleCode/PIONE/Package3/Main.pione
new file: SampleCode/PIONE/Package3/Second.pione
Add: tutorial for PIONE WebClient.
new file: SampleCode/PIONE/Packages/CenterGet(Kinoshita)+v0.0.1.ppg
new file: SampleCode/PIONE/Packages/HelloWorld(Kinoshita)+v0.0.1.ppg
kinoshita-eos [Wed, 19 Nov 2014 02:01:07 +0000 (11:01 +0900)]
Add: PIONE-Package tutorial
new file: SampleCode/PIONE/Package1/HelloWorld.pione
new file: SampleCode/PIONE/Package2/HelloWorld.pione
kinoshita-eos [Mon, 10 Nov 2014 04:04:14 +0000 (13:04 +0900)]
Add: pione-pnml tutorial for Advanced1.(using mrc3Dto2D)
new file: SampleCode/PIONE-PNML/Advanced1/Initial.md
new file: SampleCode/PIONE-PNML/Advanced1/Initial.pione
new file: SampleCode/PIONE-PNML/Advanced1/Initial.pnml
new file: SampleCode/PIONE-PNML/Advanced1/Ref2DtoTiff.md
new file: SampleCode/PIONE-PNML/Advanced1/Ref2DtoTiff.pione
new file: SampleCode/PIONE-PNML/Advanced1/Ref2DtoTiff.pnml
new file: SampleCode/PIONE-PNML/Advanced1/Ref3Dto2D.md
new file: SampleCode/PIONE-PNML/Advanced1/Ref3Dto2D.pnml
kinoshita-eos [Wed, 5 Nov 2014 08:30:27 +0000 (17:30 +0900)]
Add: tutorial PIONE-PNML for multiple input and output
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSed.md
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSed.pnml
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/Input1.txt
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/Input2.txt
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/line1.swap
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/line2.swap
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/ref1.sed
new file: SampleCode/PIONE-PNML/Basic3/TextSwapSedInput/ref2.sed
kinoshita-eos [Wed, 5 Nov 2014 02:32:44 +0000 (11:32 +0900)]
Modify: CenterGet.pione
modified: SampleCode/PIONE/Advanced1/CenterGet.pione
kinoshita-eos [Wed, 5 Nov 2014 01:55:59 +0000 (10:55 +0900)]
Modify: CenterGet.pione: to use SampleData.
modified: SampleCode/PIONE/Advanced1/CenterGet.pione
kinoshita-eos [Wed, 5 Nov 2014 01:23:02 +0000 (10:23 +0900)]
Bug Fixed: CenterGet.pione
modified: SampleCode/PIONE/Advanced1/CenterGet.pione
kinoshita-eos [Tue, 4 Nov 2014 06:28:18 +0000 (15:28 +0900)]
Add: tutorial for PIONE-PNML
new file: SampleCode/PIONE-PNML/Basic1/HelloWorld.md
new file: SampleCode/PIONE-PNML/Basic1/HelloWorld.pnml
new file: SampleCode/PIONE-PNML/Basic2/Serial2.md
new file: SampleCode/PIONE-PNML/Basic2/Serial2.pnml
new file: SampleCode/PIONE-PNML/Basic2/SerialInput/test1.in
new file: SampleCode/PIONE-PNML/Basic2/SerialInput/test2.in
new file: SampleCode/PIONE-PNML/Basic2/SerialInput/test3.in
new file: SampleCode/PIONE-PNML/Basic2/SerialInput/test4.in
new file: SampleCode/PIONE-PNML/Basic2/SerialInput/test5.in
Add: tutorial for PIONE
new file: SampleCode/PIONE/Advanced1/CenterGet.pione
kinoshita-eos [Thu, 30 Oct 2014 02:25:10 +0000 (11:25 +0900)]
Add: Basic tutorial for PIONE
new file: SampleCode/PIONE/Basic1/HelloWorld.pione
new file: SampleCode/PIONE/Basic2/Multiplying.pione
new file: SampleCode/PIONE/Basic2/Multiplying2.pione
new file: SampleCode/PIONE/Basic2/MultiplyingInput/test.in
new file: SampleCode/PIONE/Basic3/MultiplyingFiles1.pione
new file: SampleCode/PIONE/Basic3/MultiplyingFiles2.pione
new file: SampleCode/PIONE/Basic3/MultiplyingFiles3.pione
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test1.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test2.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test3.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test4.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test5.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test6.in
new file: SampleCode/PIONE/Basic3/MultiplyingFilesInput/test7.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesEach.pione
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test1.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test2.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test3.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test4.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test5.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test6.in
new file: SampleCode/PIONE/Basic4/MultiplyingFilesInput/test7.in
new file: SampleCode/PIONE/Basic5/Serial2.pione
new file: SampleCode/PIONE/Basic5/SerialInput/test1.in
new file: SampleCode/PIONE/Basic5/SerialInput/test2.in
new file: SampleCode/PIONE/Basic5/SerialInput/test3.in
new file: SampleCode/PIONE/Basic5/SerialInput/test4.in
new file: SampleCode/PIONE/Basic5/SerialInput/test5.in
kinoshita-eos [Tue, 28 Oct 2014 08:47:58 +0000 (17:47 +0900)]
Modify: Support for selecting option.
modified: Small Tools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile
kinoshita-eos [Tue, 28 Oct 2014 06:48:56 +0000 (15:48 +0900)]
Add: Tutorial for mrcImageSpatialFrequencyFilter.
new file: SampleData/1VOM-N.FNC
new file: Small Tools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile
new file: Small Tools/mrcImage/mrcImageSpatialFrequencyFilter/Makefile/Makefile-lib
Modify: View or Update for OptionControlFile in Debugger.
modified: TIPS/Debugger/Makefile/Makefile-lib
Add: TIP to express a power spectrum of FFT Image.
new file: TIPS/FFTExpression/Makefile/Makefile
new file: TIPS/FFTExpression/Makefile/Makefile-lib
Modify: Support to the default setting for an extention PRJ.
modified: TIPS/Projection3DImage/Makefile/Makefile
modified: TIPS/Projection3DImage/Makefile/Makefile-lib
Modify: Update Comment.
modified: Small Tools/Template/Makefile/Makefile
kinoshita-eos [Mon, 27 Oct 2014 04:59:26 +0000 (13:59 +0900)]
Modify: support for support a graph for multiple data.
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
Bug fixed: title of graph element.
modified: TIPS/Gnuplot/Makefile/Makefile-lib
kinoshita-eos [Fri, 24 Oct 2014 06:33:24 +0000 (15:33 +0900)]
Modify: for setting to SN ratio about input of FNC.
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
Modify: Support the viewer for multiple files on gnuplot.
modified: TIPS/Gnuplot/Makefile/Makefile
modified: TIPS/Gnuplot/Makefile/Makefile-lib
kinoshita-eos [Fri, 24 Oct 2014 01:14:07 +0000 (10:14 +0900)]
Add: TIPS to add noise to file.
new file: TIPS/NoiseAdd/Makefile/Makefile
new file: TIPS/NoiseAdd/Makefile/Makefile-lib
Modify: Add tutorial version to template Makefile
modified: Small Tools/Template/Makefile/Makefile
modified: Small Tools/Template/Makefile/Makefile-lib
modified: Small Tools/mrcImage/Makefile
modified: TIPS/Makefile
modified: TIPS/Template/Makefile/Makefile
modified: TIPS/Template/Makefile/Makefile-lib
kinoshita-eos [Thu, 23 Oct 2014 08:10:14 +0000 (17:10 +0900)]
Add: SampleData to be added noise
new file: SampleData/1VOM.mrc
Modify: Create image files for -i -mask -maskBack
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
Modify: Bug fixed: make for undefined suffix
modified: TIPS/BackImage/Makefile/Makefile-lib
modified: TIPS/CreateGridImage/Makefile/Makefile-lib
modified: TIPS/MaskImage/Makefile/Makefile-lib
modified: TIPS/Projection3DImage/Makefile/Makefile-lib
kinoshita-eos [Wed, 22 Oct 2014 08:47:18 +0000 (17:47 +0900)]
Modify: mrcImageFourierNeighborCorrelation
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
Modify: Debugger
modified: Small Tools/mrcImage/mrcImageROI3D/Makefile/Makefile
modified: TIPS/Debugger/Makefile/Makefile-lib
Modify: Bug fixed for Gnuplot
modified: TIPS/Gnuplot/Makefile/Makefile-lib
kinoshita-eos [Wed, 22 Oct 2014 01:57:22 +0000 (10:57 +0900)]
Modify: Support the graph for all option.
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
kinoshita-eos [Wed, 22 Oct 2014 01:29:32 +0000 (10:29 +0900)]
Add: TIPS of Debugger for SmallTools.(Open or Rebuild of Tools or Objects)
modified: Small Tools/Template/Makefile/Makefile
modified: Small Tools/mrcImage/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
new file: TIPS/Debugger/Makefile/Makefile-lib
modified: TIPS/Template/Makefile/Makefile
kinoshita-eos [Tue, 21 Oct 2014 08:34:30 +0000 (17:34 +0900)]
Modify: Support the graph for output file.
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
Modify: Bug fixed.
modified: TIPS/ASCII/Makefile/Makefile
modified: TIPS/ASCII/Makefile/Makefile-lib
modified: TIPS/Gnuplot/Makefile/Makefile-lib
modified: TIPS/Template/Makefile/Makefile-lib
kinoshita-eos [Tue, 21 Oct 2014 05:03:06 +0000 (14:03 +0900)]
Add: TIPS for extraction of ASCII File.
new file: TIPS/ASCII/Makefile/Makefile
new file: TIPS/ASCII/Makefile/Makefile-lib
Modify: use $(RM) as remove.
modified: Small Tools/Template/Makefile/Makefile-lib
modified: TIPS/Template/Makefile/Makefile
kinoshita-eos [Mon, 20 Oct 2014 08:08:12 +0000 (17:08 +0900)]
Modify: Add help message.
modified: TIPS/Gnuplot/Makefile/Makefile-lib
kinoshita-eos [Mon, 20 Oct 2014 07:55:49 +0000 (16:55 +0900)]
Add: ASCII -> 2D/3D-Graph by GNUPLOT (But, required to specify gnuplot path ...)
new file: TIPS/Gnuplot/Makefile/Makefile
new file: TIPS/Gnuplot/Makefile/Makefile-lib
Modify: help message by "make" or "make help".
modified: 2DClustering/2DClustering1/Makefile
modified: CTFCorrection/CTFCorrection1/Makefile
modified: CTFCorrection/CTFCorrection2/Makefile
modified: CTFCorrection/CTFCorrection3/Makefile
modified: CTFCorrection/CTFCorrection4/Makefile
modified: CTFCorrection/CTFCorrection5/Makefile
modified: CTFCorrection/CTFCorrection6/Makefile
modified: SingleParticle/3DReconstruction/Makefile
modified: SingleParticle/3DReconstruction0/Makefile
modified: SingleParticle/3DReconstruction1/Makefile
modified: SingleParticle/3DReconstruction4/Makefile
modified: SingleParticle/3DReconstructionRadon/Makefile
modified: SingleParticle/Reference0/Makefile
modified: SingleParticle/Reference1/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Tomography/Tomography0/Makefile
modified: Tomography/Tomography1/Makefile
modified: Tomography/Tomography2/Makefile
modified: Tomography/Tomography4/Makefile
modified: Tomography/Tomography5/Makefile
modified: Tomography/Tomography6/Makefile
modified: Tomography/Tomography7/Makefile
kinoshita-eos [Mon, 20 Oct 2014 02:28:08 +0000 (11:28 +0900)]
Add: tutorial for mrcImageROI3D
Changes to be committed:
new file: Small Tools/mrcImage/mrcImageROI3D/Makefile/Makefile
new file: Small Tools/mrcImage/mrcImageROI3D/Makefile/Makefile-lib
kinoshita-eos [Fri, 17 Oct 2014 08:22:31 +0000 (17:22 +0900)]
Add: TIPS of Projection for 3D
new file: TIPS/Projection3DImage/Makefile/Makefile
new file: TIPS/Projection3DImage/Makefile/Makefile-lib
Modify: Template of tutorial Makefile.
Changes to be committed:
modified: CTFCorrection/CTFCorrection4/Makefile.config
modified: CTFCorrection/CTFCorrection5/Makefile.config
modified: Small Tools/Template/Makefile/Makefile
modified: Small Tools/Template/Makefile/Makefile-lib
modified: Small Tools/mrcImage/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
renamed: TIPS/BackImage/Makefile -> TIPS/BackImage/Makefile/Makefile
renamed: TIPS/BackImage/Makefile-lib -> TIPS/BackImage/Makefile/Makefile-lib
renamed: TIPS/CreateGridImage/Makefile -> TIPS/CreateGridImage/Makefile/Makefile
renamed: TIPS/CreateGridImage/Makefile-lib -> TIPS/CreateGridImage/Makefile/Makefile-lib
renamed: TIPS/Help/Makefile-lib -> TIPS/Help/Makefile/Makefile-lib
renamed: TIPS/LoopCommand/Makefile -> TIPS/LoopCommand/Makefile/Makefile
renamed: TIPS/LoopCommand/Makefile-lib -> TIPS/LoopCommand/Makefile/Makefile-lib
modified: TIPS/Makefile
renamed: TIPS/MaskImage/Makefile -> TIPS/MaskImage/Makefile/Makefile
renamed: TIPS/MaskImage/Makefile-lib -> TIPS/MaskImage/Makefile/Makefile-lib
renamed: TIPS/NulImage/Makefile -> TIPS/NulImage/Makefile/Makefile
renamed: TIPS/NulImage/Makefile-lib -> TIPS/NulImage/Makefile/Makefile-lib
modified: TIPS/Template/Makefile/Makefile
modified: TIPS/Template/Makefile/Makefile-lib
kinoshita-eos [Fri, 17 Oct 2014 04:31:36 +0000 (13:31 +0900)]
Modify: Add Final for Template.
Changes to be committed:
modified: Small Tools/Template/Makefile/Makefile
kinoshita-eos [Fri, 17 Oct 2014 04:16:25 +0000 (13:16 +0900)]
Modify: Add the succeed message for Template.
modified: Small Tools/mrcImage/Makefile
Add: Template of TIPS.
new file: TIPS/Makefile
new file: TIPS/Template/Makefile/Makefile
new file: TIPS/Template/Makefile/Makefile-lib
kinoshita-eos [Fri, 17 Oct 2014 03:44:53 +0000 (12:44 +0900)]
Add: Template of Makefile in Small Tools.
new file: Small Tools/Template/Makefile/Makefile
new file: Small Tools/Template/Makefile/Makefile-lib
new file: Small Tools/mrcImage/Makefile
Modify: Rename Subfile .config -> -lib
modified: CTFCorrection/CTFCorrection2/Makefile.config
modified: CTFCorrection/CTFCorrection4/Makefile.config
modified: CTFCorrection/CTFCorrection5/Makefile.config
modified: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
renamed: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile.config -> Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile-lib
modified: TIPS/BackImage/Makefile
renamed: TIPS/BackImage/Makefile.config -> TIPS/BackImage/Makefile-lib
modified: TIPS/CreateGridImage/Makefile
renamed: TIPS/CreateGridImage/Makefile.config -> TIPS/CreateGridImage/Makefile-lib
renamed: TIPS/Help/Makefile.config -> TIPS/Help/Makefile-lib
modified: TIPS/LoopCommand/Makefile
renamed: TIPS/LoopCommand/Makefile.config -> TIPS/LoopCommand/Makefile-lib
modified: TIPS/MaskImage/Makefile
renamed: TIPS/MaskImage/Makefile.config -> TIPS/MaskImage/Makefile-lib
modified: TIPS/NulImage/Makefile
renamed: TIPS/NulImage/Makefile.config -> TIPS/NulImage/Makefile-lib
kinoshita-eos [Fri, 17 Oct 2014 00:54:53 +0000 (09:54 +0900)]
Modify: Add help message: make or make help
Changes to be committed:
new file: Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile
renamed: Small Tools/mrcImageFourierNeighborCorrelation/Makefile.config -> Small Tools/mrcImage/mrcImageFourierNeighborCorrelation/Makefile/Makefile.config
deleted: Small Tools/mrcImageFourierNeighborCorrelation/Makefile
modified: TIPS/BackImage/Makefile
modified: TIPS/BackImage/Makefile.config
new file: TIPS/Help/Makefile.config
deleted: TIPS/MaskImage/.EosLog
modified: TIPS/MaskImage/Makefile
modified: TIPS/MaskImage/Makefile.config
modified: TIPS/NulImage/Makefile
modified: TIPS/NulImage/Makefile.config
kinoshita-eos [Wed, 15 Oct 2014 08:48:01 +0000 (17:48 +0900)]
Add: tutorial of mrcImageFourierNeighborCorrelation
new file: SampleData/1VOM-N.mrc
new file: Small Tools/mrcImageFourierNeighborCorrelation/Makefile
new file: Small Tools/mrcImageFourierNeighborCorrelation/Makefile.config
renamed: TIPS/BackData/Makefile -> TIPS/BackImage/Makefile
renamed: TIPS/BackData/Makefile.config -> TIPS/BackImage/Makefile.config
deleted: TIPS/BinShape/Makefile.config
modified: TIPS/CreateGridImage/Makefile.config
new file: TIPS/MaskImage/.EosLog
renamed: TIPS/BinShape/Makefile -> TIPS/MaskImage/Makefile
new file: TIPS/MaskImage/Makefile.config
kinoshita-eos [Wed, 15 Oct 2014 03:02:51 +0000 (12:02 +0900)]
Add: TIPS Data for Mask and MaskBack of mrcImageFourierNeighborCorrelation
new file: TIPS/BackData/Makefile
new file: TIPS/BackData/Makefile.config
new file: TIPS/BinShape/Makefile
new file: TIPS/BinShape/Makefile.config
modified: TIPS/CreateGridImage/Makefile.config
new file: TIPS/NulImage/Makefile
new file: TIPS/NulImage/Makefile.config
Takuo Yasunaga [Mon, 13 Oct 2014 19:38:04 +0000 (04:38 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/tutorial
Takuo Yasunaga [Mon, 13 Oct 2014 12:51:44 +0000 (21:51 +0900)]
For Image Analysis Tutorial
new file: ImageAnalysisI/.EosLog
new file: ImageAnalysisI/FlagellaSection.GaussConv.mrc
new file: ImageAnalysisI/FlagellaSection.NLMeans.mrc
new file: ImageAnalysisI/FlagellaSection.NLMeans3.mrc
new file: ImageAnalysisI/FlagellaSection.bilateral.mrc
new file: ImageAnalysisI/FlagellaSection.ctf.mrc
new file: ImageAnalysisI/FlagellaSection.float.mrc
new file: ImageAnalysisI/FlagellaSection.low.mrc
new file: ImageAnalysisI/FlagellaSection.low2.mrc
new file: ImageAnalysisI/FlagellaSection.low4.mrc
new file: ImageAnalysisI/FlagellaSection.mrc
new file: ImageAnalysisI/FlagellaSection.mrc.ctfinfo
new file: ImageAnalysisI/FlagellaSection.mrc.fft
new file: ImageAnalysisI/FlagellaSection.mrc.fft.pow.mrc
new file: ImageAnalysisI/FlagellaSection.mrc.win.fft.pow.mrc
new file: ImageAnalysisI/FlagellaSection.pad.fft.pow.mrc
new file: ImageAnalysisI/FlagellaSection.pad.mrc
new file: ImageAnalysisI/FlagellaSection.pad.mrc.fft
new file: ImageAnalysisI/FlagellaSection.win.mrc
new file: ImageAnalysisI/FlagellaSection.win.mrc.fft
new file: ImageAnalysisI/FlagellaSectionROI.GaussConv.mrc
new file: ImageAnalysisI/FlagellaSectionROI.NLMeans.mrc
new file: ImageAnalysisI/FlagellaSectionROI.bilateral.mrc
new file: ImageAnalysisI/FlagellaSectionROI.ctf.low.mrc
new file: ImageAnalysisI/FlagellaSectionROI.ctf.mrc
new file: ImageAnalysisI/FlagellaSectionROI.low.mrc
new file: ImageAnalysisI/FlagellaSectionROI.mrc
new file: ImageAnalysisI/GaussDisc.kernel
new file: ImageAnalysisI/GaussDisc.kernel.mrc
new file: ImageAnalysisI/SiemensStar.ctf.mrc
new file: ImageAnalysisI/SiemensStar.ctfcomp.mrc
new file: ImageAnalysisI/SiemensStar.ctfcomp0.mrc
new file: ImageAnalysisI/SiemensStar.ctfcomp1.mrc
new file: ImageAnalysisI/SiemensStar.ctftest0.mrc
new file: ImageAnalysisI/SiemensStar.ctftest1.fft
new file: ImageAnalysisI/SiemensStar.ctftest1.mrc
new file: ImageAnalysisI/SiemensStar.low.mrc
new file: ImageAnalysisI/SiemensStar.mrc
new file: ImageAnalysisI/ant003.hilight1.mrc
new file: ImageAnalysisI/ant003.hilight2.mrc
new file: ImageAnalysisI/ant003.mrc
new file: ImageAnalysisI/ant003.tif
new file: ImageAnalysisI/mijinko.hi.center.mrc
new file: ImageAnalysisI/mijinko.hi.mrc
new file: ImageAnalysisI/mijinko.prewitt.abs.mrc
new file: ImageAnalysisI/mijinko.prewitt.sqrt.mrc
new file: ImageAnalysisI/mijinko.robert.abs.mrc
new file: ImageAnalysisI/mijinko.robert.sqrt.mrc
new file: ImageAnalysisI/mijinko.sobel.abs.mrc
new file: ImageAnalysisI/mijinko.sobel.sqrt.mrc
new file: ImageAnalysisI/mijinnko.center.mrc
new file: ImageAnalysisI/mijinnko.fft
new file: ImageAnalysisI/mijinnko.mrc
new file: ImageAnalysisI/mijinnko.pad
new file: ImageAnalysisI/mijinnko.tif
new file: ImageAnalysisI/mijinnko.win
new file: ImageAnalysisI/mijinnkotachi.tif
kinoshita-eos [Thu, 9 Oct 2014 07:55:08 +0000 (16:55 +0900)]
Add: Support CTF for Grid or 1Point Image.(make all2D)
modified: CTFCorrection/CTFCorrection2/Makefile
modified: CTFCorrection/CTFCorrection2/Makefile.config
kinoshita-eos [Wed, 24 Sep 2014 09:36:39 +0000 (18:36 +0900)]
Add: tutorial of CTF Correction including noise.
modified: CTFCorrection/CTFCorrection2/Makefile
modified: CTFCorrection/CTFCorrection5/Makefile.config
new file: CTFCorrection/CTFCorrection6/Input.inimrc
new file: CTFCorrection/CTFCorrection6/Makefile
new file: CTFCorrection/CTFCorrection6/Makefile.config
kinoshita-eos [Tue, 23 Sep 2014 23:43:54 +0000 (08:43 +0900)]
Bug Fixed: Modify order of Observation and AddNoise for CTF Correction tutotial.
modified: CTFCorrection/CTFCorrection2/Makefile.config
modified: CTFCorrection/CTFCorrection3/Makefile.config
kinoshita-eos [Mon, 22 Sep 2014 08:26:56 +0000 (17:26 +0900)]
Modify: CTFCorrection5
modified: CTFCorrection/CTFCorrection5/Makefile
modified: CTFCorrection/CTFCorrection5/Makefile.config
kinoshita-eos [Mon, 22 Sep 2014 01:30:13 +0000 (10:30 +0900)]
Bug fixed: for CTFCorrection5
modified: CTFCorrection/CTFCorrection3/Makefile.config
modified: CTFCorrection/CTFCorrection5/Makefile
modified: TIPS/LoopCommand/Makefile.config
kinoshita-eos [Mon, 22 Sep 2014 00:51:38 +0000 (09:51 +0900)]
Modify: Remove Test Command
modified: CTFCorrection/CTFCorrection2/Makefile.config
Add: CTFCorrection tutorial data.
new file: CTFCorrection/CTFCorrection5/Input.inimrc
new file: CTFCorrection/CTFCorrection5/Makefile
new file: CTFCorrection/CTFCorrection5/Makefile.config
Add: function to create list about extention.
modified: TIPS/LoopCommand/Makefile.config
kinoshita-eos [Fri, 19 Sep 2014 07:31:00 +0000 (16:31 +0900)]
Modify: to be usable at other makefile(include Makefile.config)
modified: CTFCorrection/CTFCorrection1/Makefile
modified: CTFCorrection/CTFCorrection2/Makefile
renamed: CTFCorrection/CTFCorrection2/Makefile -> CTFCorrection/CTFCorrection2/Makefile.config
modified: CTFCorrection/CTFCorrection3/Makefile
renamed: CTFCorrection/CTFCorrection3/Makefile -> CTFCorrection/CTFCorrection3/Makefile.config
new file: CTFCorrection/CTFCorrection4/Input.inimrc
modified: CTFCorrection/CTFCorrection4/Makefile
new file: CTFCorrection/CTFCorrection4/Makefile.config
kinoshita-eos [Thu, 18 Sep 2014 12:14:00 +0000 (21:14 +0900)]
Add: tutorial of CTFCorrection
new file: CTFCorrection/CTFCorrection4/Makefile
Modify: Loop of each file
modified: TIPS/LoopCommand/Makefile.config
kinoshita-eos [Thu, 18 Sep 2014 07:08:24 +0000 (16:08 +0900)]
Modify: add ctfMode about CTFCorrection3
modified: CTFCorrection/CTFCorrection3/Makefile
kinoshita-eos [Thu, 18 Sep 2014 06:47:06 +0000 (15:47 +0900)]
Add: for Loop of Small Tools
new file: TIPS/LoopCommand/Makefile
new file: TIPS/LoopCommand/Makefile.config
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