--- /dev/null
+/* Common problem input/output routines /structure
+ 25/Nov/2007 by Takeaki Uno e-mail:uno@nii.jp,
+ homepage: http://research.nii.ac.jp/~uno/index.html */
+/* This program is available for only academic use, basically.
+ Anyone can modify this program, but he/she has to write down
+ the change of the modification on the top of the source code.
+ Neither contact nor appointment to Takeaki Uno is needed.
+ If one wants to re-distribute this code, do not forget to
+ refer the newest code, and show the link to homepage of
+ Takeaki Uno, to notify the news about the codes for the users.
+ For the commercial use, please make a contact to Takeaki Uno. */
+
+/***************************************************/
+
+#ifndef _problem_h_
+#define _problem_h_
+
+#include"stdlib2.h"
+#include"queue.h"
+#include"itemset.h"
+
+#define PROBLEM_FREQSET 1
+#define PROBLEM_MAXIMAL 2
+#define PROBLEM_CLOSED 4
+#define PROBLEM_EX_MAXIMAL 8
+#define PROBLEM_EX_CLOSED 16
+
+/***** parameters for PROBLEM initialization, given to flag *****/
+
+#define PROBLEM_PRINT_DENSE 4 // print density threshold
+#define PROBLEM_PRINT_SHRINK 8 // print properties of shrinked database
+#define PROBLEM_PRINT_FRQ 16 // print density threshold
+#define PROBLEM_NORMALIZE 32 // print density threshold
+
+#define PROBLEM_ITEMARY 128 // alloc itemary
+#define PROBLEM_ITEMJUMP 256 // alloc itemjump
+#define PROBLEM_ITEMFLAG 512 // alloc itemflag
+#define PROBLEM_ITEMMARK 1024 // alloc itemmark
+#define PROBLEM_ITEMCAND 2048 // alloc itemcand
+#define PROBLEM_VECARY 4096 // alloc itemary
+#define PROBLEM_VECJUMP 8192 // alloc vecjump
+#define PROBLEM_VECFLAG 16384 // alloc vecflag
+#define PROBLEM_VECMARK 32768 // alloc vecmark
+#define PROBLEM_VECCAND 65536 // alloc veccand
+//4194304
+#define PROBLEM_OCC_T 524288 // alloc occ_t
+#define PROBLEM_SHIFT 1048576 // allocate shift
+#define PROBLEM_OCC_W 2097152 // weight/positive-weight sum for items
+#define PROBLEM_OCC_PW 4194304 // weight/positive-weight sum for items
+#define PROBLEM_OCC_W2 8388608 // weight/positive-weight sum for items
+
+#define PROBLEM_OCC1 16 // alloc occ
+#define PROBLEM_OCC2 32 // alloc occ and ins all to list 0
+#define PROBLEM_OCC3 48 // alloc occ and ins all to list "siz"
+
+typedef struct {
+ clock_t start_time, end_time;
+ int problem;
+ LONG prog;
+ int prog2;
+ double dense;
+ char *input_fname;
+ char *output_fname;
+ char *weight_fname;
+ char *table_fname, *table2_fname;
+ char *position_fname, *position2_fname;
+
+ char *sgraph_fname, *sgraph2_fname;
+ char *sgraph_wfname, *sgraph2_wfname;
+ char *agraph_fname, *agraph2_fname;
+ char *trsact_fname, *trsact_fname2, *trsact_wfname, *trsact_wfname2, *trsact_pfname;
+ char *trsact2_fname, *trsact2_fname2, *trsact2_wfname, *trsact2_wfname2, *trsact2_pfname;
+ char *seq_fname, *seq2_fname;
+ char *fstar_fname, *fstar2_fname;
+ char *mat_fname, *mat2_fname;
+ char *smat_fname, *smat2_fname;
+ char *setfamily_fname, *setfamily2_fname;
+ char *setfamily_wfname, *setfamily2_wfname;
+
+ ITEMSET II, II2;
+ QUEUE ff; // for agraph search
+ int *vf, *dep; // for agraph search
+
+ int root, dir, edge_dir;
+ double th, th2, th3; // thresholds
+ double ratio, ratio2; // ratio
+ int num, siz, dim, len;
+ QUEUE_INT clms;
+ VEC_ID rows;
+
+ QUEUE_ID **shift;
+ QUEUE itemjump, itemcand, vecjump, veccand, *OQ, *OQ2, *VQ, *VQ2; // for delivery
+ QUEUE_INT *itemary;
+ int *itemmark, *itemflag, *vecmark, *vecflag; // mark for vector
+ VEC_ID *vecary, *occ_t;
+ WEIGHT *occ_w, *occ_pw, *occ_w2, *occ_pw2;
+ QUEUE oo;
+
+ char *pat; // pattern string
+ int plen, perr; // pattern length and #error allowed
+
+#ifdef _alist_h_
+ MALIST occ;
+#endif
+
+#ifdef _sgraph_h_
+ SGRAPH SG, SG2;
+#endif
+
+#ifdef _agraph_h_
+ AGRAPH AG, AG2;
+#endif
+
+#ifdef _trsact_h_
+ TRSACT TT, TT2;
+#endif
+
+#ifdef _seq_h_
+ SEQ SS, SS2;
+#endif
+
+#ifdef _fstar_h_
+ FSTAR FS, FS2;
+#endif
+
+#ifdef _vec_h_
+ MAT MM, MM2;
+ SMAT SM, SM2;
+ SETFAMILY FF, FF2;
+#endif
+
+} PROBLEM;
+
+
+/***** print filename information ****/
+void PROBLEM_print (PROBLEM *P);
+
+/***** print usage of the program *****/
+void PROBLEM_error ();
+
+/***** read parameters given by command line *****/
+void PROBLEM_read_param (int argc, char *argv[], PROBLEM *P);
+
+/***** PROBLEM and ITEMSET initialization *****/
+/* all pointers are set to NULL, but don't touch filenames */
+void PROBLEM_init (PROBLEM *P);
+
+/***** PROBLEM initialization: load the files given by filenames ******/
+void PROBLEM_init2 (PROBLEM *P, int flag);
+
+/***** allocate memory according to flag *****/
+void PROBLEM_alloc (PROBLEM *PP, QUEUE_ID siz, QUEUE_ID siz2, size_t siz3, PERM *p, int f);
+
+/* termination of problem */
+void PROBLEM_end (PROBLEM *PP);
+
+
+#endif
+
+
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