import java.util.ArrayList;
import java.util.List;
+import java.util.Map;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
import org.xerial.lens.LensTest.Gene;
+import org.xerial.lens.ObjectLensTest.PropReader;
import org.xerial.silk.SilkParser;
import org.xerial.util.FileResource;
import org.xerial.util.log.Logger;
-public class ObjectMapperTest
-{
+public class ObjectMapperTest {
private static Logger _logger = Logger.getLogger(ObjectMapperTest.class);
@Before
- public void setUp() throws Exception
- {}
+ public void setUp() throws Exception {}
@After
- public void tearDown() throws Exception
- {}
+ public void tearDown() throws Exception {}
- public static class CoordinateData
- {
+ public static class CoordinateData {
public String group;
public String name;
public String species;
public String revision;
@Override
- public String toString()
- {
- return String.format("group=%s, name=%s, species=%s, revision=%s", group, name, species, revision);
+ public String toString() {
+ return String.format("group=%s, name=%s, species=%s, revision=%s", group, name,
+ species, revision);
}
}
// query: (gene, name, start, end, strand)
- public static class GeneData
- {
+ public static class GeneData {
public final int id;
public final String name;
public final long start;
private StringBuilder sequence = new StringBuilder();
- public GeneData(int id, String name, long start, long end, String strand)
- {
+ public GeneData(int id, String name, long start, long end, String strand) {
this.id = id;
this.name = name;
this.start = start;
this.strand = strand;
}
- public void appendSequence(String seq)
- {
+ public void appendSequence(String seq) {
sequence.append(seq);
}
@Override
- public String toString()
- {
- return String.format("id=%d, name=%s, start=%s, end=%s, strand=%s, sequence=%s", id, name, start, end,
- strand, sequence.toString());
+ public String toString() {
+ return String.format("id=%d, name=%s, start=%s, end=%s, strand=%s, sequence=%s", id,
+ name, start, end, strand, sequence.toString());
}
}
- public static class GeneDB
- {
+ public static class GeneDB {
public final String description;
- public GeneDB(String description)
- {
+ public GeneDB(String description) {
this.description = description;
}
- public void addCoordinate_Gene(CoordinateData c, GeneData g)
- {
+ public void addCoordinate_Gene(CoordinateData c, GeneData g) {
_logger.debug(String.format("c(%s), g(%s)", c, g));
}
- public void addCoordinate(CoordinateData c)
- {
+ public void addCoordinate(CoordinateData c) {
_logger.debug(c);
}
- public void addGene(GeneData g)
- {
+ public void addGene(GeneData g) {
_logger.debug(g);
}
}
@Test
- public void map() throws Exception
- {
+ public void map() throws Exception {
ObjectMapper mapper = new ObjectMapper(GeneDB.class);
- GeneDB gdb = mapper.map(GeneDB.class, new SilkParser(FileResource.find(ObjectMapperTest.class, "gene.silk")));
+ GeneDB gdb = mapper.map(GeneDB.class, new SilkParser(FileResource.find(
+ ObjectMapperTest.class, "gene.silk")));
assertEquals("gene data", gdb.description);
}
SPADE, HEART, CLOVER, DIAMOND
}
- public static class EnumData
- {
+ public static class EnumData {
public List<MARK> mark;
}
@Test
- public void enumBind() throws Exception
- {
- EnumData ret = Lens.loadSilk(EnumData.class, FileResource.find(ObjectMapperTest.class, "enum.silk"));
+ public void enumBind() throws Exception {
+ EnumData ret = Lens.loadSilk(EnumData.class, FileResource.find(ObjectMapperTest.class,
+ "enum.silk"));
assertEquals(6, ret.mark.size());
}
- public static class Read
- {
+ public static class Read {
public long viewstart;
public long viewend;
}
@Test
- public void primitiveTypeBind() throws Exception
- {
+ public void primitiveTypeBind() throws Exception {
Read r = Lens.loadSilk(Read.class, FileResource.find(ObjectMapperTest.class, "long.silk"));
assertEquals(1721L, r.viewstart);
assertEquals(2871L, r.viewend);
}
- public static class MyGene extends Gene
- {
+ public static class MyGene extends Gene {
}
- public static class Rename
- {
+ public static class Rename {
ArrayList<MyGene> genes = new ArrayList<MyGene>();
- public void addCoordinate_Gene(Coordinate c, MyGene g)
- {
+ public void addCoordinate_Gene(Coordinate c, MyGene g) {
genes.add(g);
}
}
@Test
- public void rename() throws Exception
- {
- Rename r = Lens.loadSilk(Rename.class, FileResource.find(ObjectMapperTest.class, "gene.silk"));
+ public void rename() throws Exception {
+ Rename r = Lens.loadSilk(Rename.class, FileResource.find(ObjectMapperTest.class,
+ "gene.silk"));
assertEquals(2, r.genes.size());
}
+ @Test
+ public void property() throws Exception {
+ PropReader p = Lens.loadSilk(PropReader.class, FileResource.open(ObjectMapperTest.class,
+ "property.silk"));
+
+ assertEquals(2, p.prop.size());
+ assertEquals("hello", p.prop.get("db.name"));
+ assertEquals("sqlite", p.prop.get("db.type"));
+ }
+
+ public static class MapField {
+ public Map<Integer, String> id_name;
+ }
+
+ @Test
+ public void mapPutter() throws Exception {
+ MapField m = Lens.loadSilk(MapField.class, FileResource.open(ObjectMapperTest.class,
+ "map.silk"));
+ assertNotNull(m.id_name);
+ assertEquals(2, m.id_name.size());
+ String n1 = m.id_name.get(1);
+ String n2 = m.id_name.get(2);
+ assertEquals("leo", n1);
+ assertEquals("yui", n2);
+ }
+
+ public static class Person {
+ public int id;
+ public String name;
+
+ @Override
+ public String toString() {
+ return Lens.toJSON(this);
+ }
+ }
+
+ public static class ClassRoom {
+ public String name;
+
+ @Override
+ public String toString() {
+ return Lens.toJSON(this);
+ }
+ }
+
+ public static class ComplexMapField {
+ public Map<Person, ClassRoom> classes;
+ }
+
+ @Test
+ public void complexMapField() throws Exception {
+ ComplexMapField m = Lens.loadSilk(ComplexMapField.class, FileResource.open(
+ ObjectMapperTest.class, "map2.silk"));
+ assertEquals(2, m.classes.size());
+
+ _logger.debug(Lens.toJSON(m.classes));
+ }
}
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