+++ /dev/null
-// Code generated by protoc-gen-go. DO NOT EDIT.
-// source: google/genomics/v1/readgroup.proto
-
-package genomics
-
-import proto "github.com/golang/protobuf/proto"
-import fmt "fmt"
-import math "math"
-import _ "google.golang.org/genproto/googleapis/api/annotations"
-import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
-
-// Reference imports to suppress errors if they are not otherwise used.
-var _ = proto.Marshal
-var _ = fmt.Errorf
-var _ = math.Inf
-
-// A read group is all the data that's processed the same way by the sequencer.
-type ReadGroup struct {
- // The server-generated read group ID, unique for all read groups.
- // Note: This is different than the @RG ID field in the SAM spec. For that
- // value, see [name][google.genomics.v1.ReadGroup.name].
- Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
- // The dataset to which this read group belongs.
- DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
- // The read group name. This corresponds to the @RG ID field in the SAM spec.
- Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
- // A free-form text description of this read group.
- Description string `protobuf:"bytes,4,opt,name=description" json:"description,omitempty"`
- // A client-supplied sample identifier for the reads in this read group.
- SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId" json:"sample_id,omitempty"`
- // The experiment used to generate this read group.
- Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment" json:"experiment,omitempty"`
- // The predicted insert size of this read group. The insert size is the length
- // the sequenced DNA fragment from end-to-end, not including the adapters.
- PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize" json:"predicted_insert_size,omitempty"`
- // The programs used to generate this read group. Programs are always
- // identical for all read groups within a read group set. For this reason,
- // only the first read group in a returned set will have this field
- // populated.
- Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs" json:"programs,omitempty"`
- // The reference set the reads in this read group are aligned to.
- ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
- // A map of additional read group information. This must be of the form
- // map<string, string[]> (string key mapping to a list of string values).
- Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,12,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
-}
-
-func (m *ReadGroup) Reset() { *m = ReadGroup{} }
-func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
-func (*ReadGroup) ProtoMessage() {}
-func (*ReadGroup) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0} }
-
-func (m *ReadGroup) GetId() string {
- if m != nil {
- return m.Id
- }
- return ""
-}
-
-func (m *ReadGroup) GetDatasetId() string {
- if m != nil {
- return m.DatasetId
- }
- return ""
-}
-
-func (m *ReadGroup) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
-}
-
-func (m *ReadGroup) GetDescription() string {
- if m != nil {
- return m.Description
- }
- return ""
-}
-
-func (m *ReadGroup) GetSampleId() string {
- if m != nil {
- return m.SampleId
- }
- return ""
-}
-
-func (m *ReadGroup) GetExperiment() *ReadGroup_Experiment {
- if m != nil {
- return m.Experiment
- }
- return nil
-}
-
-func (m *ReadGroup) GetPredictedInsertSize() int32 {
- if m != nil {
- return m.PredictedInsertSize
- }
- return 0
-}
-
-func (m *ReadGroup) GetPrograms() []*ReadGroup_Program {
- if m != nil {
- return m.Programs
- }
- return nil
-}
-
-func (m *ReadGroup) GetReferenceSetId() string {
- if m != nil {
- return m.ReferenceSetId
- }
- return ""
-}
-
-func (m *ReadGroup) GetInfo() map[string]*google_protobuf3.ListValue {
- if m != nil {
- return m.Info
- }
- return nil
-}
-
-type ReadGroup_Experiment struct {
- // A client-supplied library identifier; a library is a collection of DNA
- // fragments which have been prepared for sequencing from a sample. This
- // field is important for quality control as error or bias can be introduced
- // during sample preparation.
- LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId" json:"library_id,omitempty"`
- // The platform unit used as part of this experiment, for example
- // flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
- // @RG PU field in the SAM spec.
- PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit" json:"platform_unit,omitempty"`
- // The sequencing center used as part of this experiment.
- SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter" json:"sequencing_center,omitempty"`
- // The instrument model used as part of this experiment. This maps to
- // sequencing technology in the SAM spec.
- InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel" json:"instrument_model,omitempty"`
-}
-
-func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
-func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
-func (*ReadGroup_Experiment) ProtoMessage() {}
-func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 0} }
-
-func (m *ReadGroup_Experiment) GetLibraryId() string {
- if m != nil {
- return m.LibraryId
- }
- return ""
-}
-
-func (m *ReadGroup_Experiment) GetPlatformUnit() string {
- if m != nil {
- return m.PlatformUnit
- }
- return ""
-}
-
-func (m *ReadGroup_Experiment) GetSequencingCenter() string {
- if m != nil {
- return m.SequencingCenter
- }
- return ""
-}
-
-func (m *ReadGroup_Experiment) GetInstrumentModel() string {
- if m != nil {
- return m.InstrumentModel
- }
- return ""
-}
-
-type ReadGroup_Program struct {
- // The command line used to run this program.
- CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine" json:"command_line,omitempty"`
- // The user specified locally unique ID of the program. Used along with
- // `prevProgramId` to define an ordering between programs.
- Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
- // The display name of the program. This is typically the colloquial name of
- // the tool used, for example 'bwa' or 'picard'.
- Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
- // The ID of the program run before this one.
- PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId" json:"prev_program_id,omitempty"`
- // The version of the program run.
- Version string `protobuf:"bytes,5,opt,name=version" json:"version,omitempty"`
-}
-
-func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
-func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
-func (*ReadGroup_Program) ProtoMessage() {}
-func (*ReadGroup_Program) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 1} }
-
-func (m *ReadGroup_Program) GetCommandLine() string {
- if m != nil {
- return m.CommandLine
- }
- return ""
-}
-
-func (m *ReadGroup_Program) GetId() string {
- if m != nil {
- return m.Id
- }
- return ""
-}
-
-func (m *ReadGroup_Program) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
-}
-
-func (m *ReadGroup_Program) GetPrevProgramId() string {
- if m != nil {
- return m.PrevProgramId
- }
- return ""
-}
-
-func (m *ReadGroup_Program) GetVersion() string {
- if m != nil {
- return m.Version
- }
- return ""
-}
-
-func init() {
- proto.RegisterType((*ReadGroup)(nil), "google.genomics.v1.ReadGroup")
- proto.RegisterType((*ReadGroup_Experiment)(nil), "google.genomics.v1.ReadGroup.Experiment")
- proto.RegisterType((*ReadGroup_Program)(nil), "google.genomics.v1.ReadGroup.Program")
-}
-
-func init() { proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor7) }
-
-var fileDescriptor7 = []byte{
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