+++ /dev/null
-// Code generated by protoc-gen-go. DO NOT EDIT.
-// source: google/genomics/v1alpha2/pipelines.proto
-
-/*
-Package genomics is a generated protocol buffer package.
-
-It is generated from these files:
- google/genomics/v1alpha2/pipelines.proto
-
-It has these top-level messages:
- ComputeEngine
- RuntimeMetadata
- Pipeline
- CreatePipelineRequest
- RunPipelineArgs
- RunPipelineRequest
- GetPipelineRequest
- ListPipelinesRequest
- ListPipelinesResponse
- DeletePipelineRequest
- GetControllerConfigRequest
- ControllerConfig
- TimestampEvent
- SetOperationStatusRequest
- ServiceAccount
- LoggingOptions
- PipelineResources
- PipelineParameter
- DockerExecutor
-*/
-package genomics
-
-import proto "github.com/golang/protobuf/proto"
-import fmt "fmt"
-import math "math"
-import _ "google.golang.org/genproto/googleapis/api/annotations"
-import google_longrunning "google.golang.org/genproto/googleapis/longrunning"
-import google_protobuf3 "github.com/golang/protobuf/ptypes/duration"
-import google_protobuf2 "github.com/golang/protobuf/ptypes/empty"
-import google_protobuf4 "github.com/golang/protobuf/ptypes/timestamp"
-import google_rpc1 "google.golang.org/genproto/googleapis/rpc/code"
-
-import (
- context "golang.org/x/net/context"
- grpc "google.golang.org/grpc"
-)
-
-// Reference imports to suppress errors if they are not otherwise used.
-var _ = proto.Marshal
-var _ = fmt.Errorf
-var _ = math.Inf
-
-// This is a compile-time assertion to ensure that this generated file
-// is compatible with the proto package it is being compiled against.
-// A compilation error at this line likely means your copy of the
-// proto package needs to be updated.
-const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
-
-// The types of disks that may be attached to VMs.
-type PipelineResources_Disk_Type int32
-
-const (
- // Default disk type. Use one of the other options below.
- PipelineResources_Disk_TYPE_UNSPECIFIED PipelineResources_Disk_Type = 0
- // Specifies a Google Compute Engine persistent hard disk. See
- // https://cloud.google.com/compute/docs/disks/#pdspecs for details.
- PipelineResources_Disk_PERSISTENT_HDD PipelineResources_Disk_Type = 1
- // Specifies a Google Compute Engine persistent solid-state disk. See
- // https://cloud.google.com/compute/docs/disks/#pdspecs for details.
- PipelineResources_Disk_PERSISTENT_SSD PipelineResources_Disk_Type = 2
- // Specifies a Google Compute Engine local SSD.
- // See https://cloud.google.com/compute/docs/disks/local-ssd for details.
- PipelineResources_Disk_LOCAL_SSD PipelineResources_Disk_Type = 3
-)
-
-var PipelineResources_Disk_Type_name = map[int32]string{
- 0: "TYPE_UNSPECIFIED",
- 1: "PERSISTENT_HDD",
- 2: "PERSISTENT_SSD",
- 3: "LOCAL_SSD",
-}
-var PipelineResources_Disk_Type_value = map[string]int32{
- "TYPE_UNSPECIFIED": 0,
- "PERSISTENT_HDD": 1,
- "PERSISTENT_SSD": 2,
- "LOCAL_SSD": 3,
-}
-
-func (x PipelineResources_Disk_Type) String() string {
- return proto.EnumName(PipelineResources_Disk_Type_name, int32(x))
-}
-func (PipelineResources_Disk_Type) EnumDescriptor() ([]byte, []int) {
- return fileDescriptor0, []int{16, 0, 0}
-}
-
-// Describes a Compute Engine resource that is being managed by a running
-// [pipeline][google.genomics.v1alpha2.Pipeline].
-type ComputeEngine struct {
- // The instance on which the operation is running.
- InstanceName string `protobuf:"bytes,1,opt,name=instance_name,json=instanceName" json:"instance_name,omitempty"`
- // The availability zone in which the instance resides.
- Zone string `protobuf:"bytes,2,opt,name=zone" json:"zone,omitempty"`
- // The machine type of the instance.
- MachineType string `protobuf:"bytes,3,opt,name=machine_type,json=machineType" json:"machine_type,omitempty"`
- // The names of the disks that were created for this pipeline.
- DiskNames []string `protobuf:"bytes,4,rep,name=disk_names,json=diskNames" json:"disk_names,omitempty"`
-}
-
-func (m *ComputeEngine) Reset() { *m = ComputeEngine{} }
-func (m *ComputeEngine) String() string { return proto.CompactTextString(m) }
-func (*ComputeEngine) ProtoMessage() {}
-func (*ComputeEngine) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{0} }
-
-func (m *ComputeEngine) GetInstanceName() string {
- if m != nil {
- return m.InstanceName
- }
- return ""
-}
-
-func (m *ComputeEngine) GetZone() string {
- if m != nil {
- return m.Zone
- }
- return ""
-}
-
-func (m *ComputeEngine) GetMachineType() string {
- if m != nil {
- return m.MachineType
- }
- return ""
-}
-
-func (m *ComputeEngine) GetDiskNames() []string {
- if m != nil {
- return m.DiskNames
- }
- return nil
-}
-
-// Runtime metadata that will be populated in the
-// [runtimeMetadata][google.genomics.v1.OperationMetadata.runtime_metadata]
-// field of the Operation associated with a RunPipeline execution.
-type RuntimeMetadata struct {
- // Execution information specific to Google Compute Engine.
- ComputeEngine *ComputeEngine `protobuf:"bytes,1,opt,name=compute_engine,json=computeEngine" json:"compute_engine,omitempty"`
-}
-
-func (m *RuntimeMetadata) Reset() { *m = RuntimeMetadata{} }
-func (m *RuntimeMetadata) String() string { return proto.CompactTextString(m) }
-func (*RuntimeMetadata) ProtoMessage() {}
-func (*RuntimeMetadata) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{1} }
-
-func (m *RuntimeMetadata) GetComputeEngine() *ComputeEngine {
- if m != nil {
- return m.ComputeEngine
- }
- return nil
-}
-
-// The pipeline object. Represents a transformation from a set of input
-// parameters to a set of output parameters. The transformation is defined
-// as a docker image and command to run within that image. Each pipeline
-// is run on a Google Compute Engine VM. A pipeline can be created with the
-// `create` method and then later run with the `run` method, or a pipeline can
-// be defined and run all at once with the `run` method.
-type Pipeline struct {
- // Required. The project in which to create the pipeline. The caller must have
- // WRITE access.
- ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
- // Required. A user specified pipeline name that does not have to be unique.
- // This name can be used for filtering Pipelines in ListPipelines.
- Name string `protobuf:"bytes,2,opt,name=name" json:"name,omitempty"`
- // User-specified description.
- Description string `protobuf:"bytes,3,opt,name=description" json:"description,omitempty"`
- // Input parameters of the pipeline.
- InputParameters []*PipelineParameter `protobuf:"bytes,8,rep,name=input_parameters,json=inputParameters" json:"input_parameters,omitempty"`
- // Output parameters of the pipeline.
- OutputParameters []*PipelineParameter `protobuf:"bytes,9,rep,name=output_parameters,json=outputParameters" json:"output_parameters,omitempty"`
- // Required. The executor indicates in which environment the pipeline runs.
- //
- // Types that are valid to be assigned to Executor:
- // *Pipeline_Docker
- Executor isPipeline_Executor `protobuf_oneof:"executor"`
- // Required. Specifies resource requirements for the pipeline run.
- // Required fields:
- //
- // *
- // [minimumCpuCores][google.genomics.v1alpha2.PipelineResources.minimum_cpu_cores]
- //
- // *
- // [minimumRamGb][google.genomics.v1alpha2.PipelineResources.minimum_ram_gb]
- Resources *PipelineResources `protobuf:"bytes,6,opt,name=resources" json:"resources,omitempty"`
- // Unique pipeline id that is generated by the service when CreatePipeline
- // is called. Cannot be specified in the Pipeline used in the
- // CreatePipelineRequest, and will be populated in the response to
- // CreatePipeline and all subsequent Get and List calls. Indicates that the
- // service has registered this pipeline.
- PipelineId string `protobuf:"bytes,7,opt,name=pipeline_id,json=pipelineId" json:"pipeline_id,omitempty"`
-}
-
-func (m *Pipeline) Reset() { *m = Pipeline{} }
-func (m *Pipeline) String() string { return proto.CompactTextString(m) }
-func (*Pipeline) ProtoMessage() {}
-func (*Pipeline) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{2} }
-
-type isPipeline_Executor interface {
- isPipeline_Executor()
-}
-
-type Pipeline_Docker struct {
- Docker *DockerExecutor `protobuf:"bytes,5,opt,name=docker,oneof"`
-}
-
-func (*Pipeline_Docker) isPipeline_Executor() {}
-
-func (m *Pipeline) GetExecutor() isPipeline_Executor {
- if m != nil {
- return m.Executor
- }
- return nil
-}
-
-func (m *Pipeline) GetProjectId() string {
- if m != nil {
- return m.ProjectId
- }
- return ""
-}
-
-func (m *Pipeline) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
-}
-
-func (m *Pipeline) GetDescription() string {
- if m != nil {
- return m.Description
- }
- return ""
-}
-
-func (m *Pipeline) GetInputParameters() []*PipelineParameter {
- if m != nil {
- return m.InputParameters
- }
- return nil
-}
-
-func (m *Pipeline) GetOutputParameters() []*PipelineParameter {
- if m != nil {
- return m.OutputParameters
- }
- return nil
-}
-
-func (m *Pipeline) GetDocker() *DockerExecutor {
- if x, ok := m.GetExecutor().(*Pipeline_Docker); ok {
- return x.Docker
- }
- return nil
-}
-
-func (m *Pipeline) GetResources() *PipelineResources {
- if m != nil {
- return m.Resources
- }
- return nil
-}
-
-func (m *Pipeline) GetPipelineId() string {
- if m != nil {
- return m.PipelineId
- }
- return ""
-}
-
-// XXX_OneofFuncs is for the internal use of the proto package.
-func (*Pipeline) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
- return _Pipeline_OneofMarshaler, _Pipeline_OneofUnmarshaler, _Pipeline_OneofSizer, []interface{}{
- (*Pipeline_Docker)(nil),
- }
-}
-
-func _Pipeline_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
- m := msg.(*Pipeline)
- // executor
- switch x := m.Executor.(type) {
- case *Pipeline_Docker:
- b.EncodeVarint(5<<3 | proto.WireBytes)
- if err := b.EncodeMessage(x.Docker); err != nil {
- return err
- }
- case nil:
- default:
- return fmt.Errorf("Pipeline.Executor has unexpected type %T", x)
- }
- return nil
-}
-
-func _Pipeline_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
- m := msg.(*Pipeline)
- switch tag {
- case 5: // executor.docker
- if wire != proto.WireBytes {
- return true, proto.ErrInternalBadWireType
- }
- msg := new(DockerExecutor)
- err := b.DecodeMessage(msg)
- m.Executor = &Pipeline_Docker{msg}
- return true, err
- default:
- return false, nil
- }
-}
-
-func _Pipeline_OneofSizer(msg proto.Message) (n int) {
- m := msg.(*Pipeline)
- // executor
- switch x := m.Executor.(type) {
- case *Pipeline_Docker:
- s := proto.Size(x.Docker)
- n += proto.SizeVarint(5<<3 | proto.WireBytes)
- n += proto.SizeVarint(uint64(s))
- n += s
- case nil:
- default:
- panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
- }
- return n
-}
-
-// The request to create a pipeline. The pipeline field here should not have
-// `pipelineId` populated, as that will be populated by the server.
-type CreatePipelineRequest struct {
- // The pipeline to create. Should not have `pipelineId` populated.
- Pipeline *Pipeline `protobuf:"bytes,1,opt,name=pipeline" json:"pipeline,omitempty"`
-}
-
-func (m *CreatePipelineRequest) Reset() { *m = CreatePipelineRequest{} }
-func (m *CreatePipelineRequest) String() string { return proto.CompactTextString(m) }
-func (*CreatePipelineRequest) ProtoMessage() {}
-func (*CreatePipelineRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{3} }
-
-func (m *CreatePipelineRequest) GetPipeline() *Pipeline {
- if m != nil {
- return m.Pipeline
- }
- return nil
-}
-
-// The pipeline run arguments.
-type RunPipelineArgs struct {
- // Required. The project in which to run the pipeline. The caller must have
- // WRITER access to all Google Cloud services and resources (e.g. Google
- // Compute Engine) will be used.
- ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
- // Pipeline input arguments; keys are defined in the pipeline documentation.
- // All input parameters that do not have default values must be specified.
- // If parameters with defaults are specified here, the defaults will be
- // overridden.
- Inputs map[string]string `protobuf:"bytes,2,rep,name=inputs" json:"inputs,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
- // Pipeline output arguments; keys are defined in the pipeline
- // documentation. All output parameters of without default values
- // must be specified. If parameters with defaults are specified
- // here, the defaults will be overridden.
- Outputs map[string]string `protobuf:"bytes,3,rep,name=outputs" json:"outputs,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
- // The Google Cloud Service Account that will be used to access data and
- // services. By default, the compute service account associated with
- // `projectId` is used.
- ServiceAccount *ServiceAccount `protobuf:"bytes,4,opt,name=service_account,json=serviceAccount" json:"service_account,omitempty"`
- // This field is deprecated. Use `labels` instead. Client-specified pipeline
- // operation identifier.
- ClientId string `protobuf:"bytes,5,opt,name=client_id,json=clientId" json:"client_id,omitempty"`
- // Specifies resource requirements/overrides for the pipeline run.
- Resources *PipelineResources `protobuf:"bytes,6,opt,name=resources" json:"resources,omitempty"`
- // Required. Logging options. Used by the service to communicate results
- // to the user.
- Logging *LoggingOptions `protobuf:"bytes,7,opt,name=logging" json:"logging,omitempty"`
- // How long to keep the VM up after a failure (for example docker command
- // failed, copying input or output files failed, etc). While the VM is up, one
- // can ssh into the VM to debug. Default is 0; maximum allowed value is 1 day.
- KeepVmAliveOnFailureDuration *google_protobuf3.Duration `protobuf:"bytes,8,opt,name=keep_vm_alive_on_failure_duration,json=keepVmAliveOnFailureDuration" json:"keep_vm_alive_on_failure_duration,omitempty"`
- // Labels to apply to this pipeline run. Labels will also be applied to
- // compute resources (VM, disks) created by this pipeline run. When listing
- // operations, operations can [filtered by labels]
- // [google.longrunning.ListOperationsRequest.filter].
- // Label keys may not be empty; label values may be empty. Non-empty labels
- // must be 1-63 characters long, and comply with [RFC1035]
- // (https://www.ietf.org/rfc/rfc1035.txt).
- // Specifically, the name must be 1-63 characters long and match the regular
- // expression `[a-z]([-a-z0-9]*[a-z0-9])?` which means the first
- // character must be a lowercase letter, and all following characters must be
- // a dash, lowercase letter, or digit, except the last character, which cannot
- // be a dash.
- Labels map[string]string `protobuf:"bytes,9,rep,name=labels" json:"labels,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
-}
-
-func (m *RunPipelineArgs) Reset() { *m = RunPipelineArgs{} }
-func (m *RunPipelineArgs) String() string { return proto.CompactTextString(m) }
-func (*RunPipelineArgs) ProtoMessage() {}
-func (*RunPipelineArgs) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{4} }
-
-func (m *RunPipelineArgs) GetProjectId() string {
- if m != nil {
- return m.ProjectId
- }
- return ""
-}
-
-func (m *RunPipelineArgs) GetInputs() map[string]string {
- if m != nil {
- return m.Inputs
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetOutputs() map[string]string {
- if m != nil {
- return m.Outputs
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetServiceAccount() *ServiceAccount {
- if m != nil {
- return m.ServiceAccount
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetClientId() string {
- if m != nil {
- return m.ClientId
- }
- return ""
-}
-
-func (m *RunPipelineArgs) GetResources() *PipelineResources {
- if m != nil {
- return m.Resources
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetLogging() *LoggingOptions {
- if m != nil {
- return m.Logging
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetKeepVmAliveOnFailureDuration() *google_protobuf3.Duration {
- if m != nil {
- return m.KeepVmAliveOnFailureDuration
- }
- return nil
-}
-
-func (m *RunPipelineArgs) GetLabels() map[string]string {
- if m != nil {
- return m.Labels
- }
- return nil
-}
-
-// The request to run a pipeline. If `pipelineId` is specified, it
-// refers to a saved pipeline created with CreatePipeline and set as
-// the `pipelineId` of the returned Pipeline object. If
-// `ephemeralPipeline` is specified, that pipeline is run once
-// with the given args and not saved. It is an error to specify both
-// `pipelineId` and `ephemeralPipeline`. `pipelineArgs`
-// must be specified.
-type RunPipelineRequest struct {
- // Types that are valid to be assigned to Pipeline:
- // *RunPipelineRequest_PipelineId
- // *RunPipelineRequest_EphemeralPipeline
- Pipeline isRunPipelineRequest_Pipeline `protobuf_oneof:"pipeline"`
- // The arguments to use when running this pipeline.
- PipelineArgs *RunPipelineArgs `protobuf:"bytes,3,opt,name=pipeline_args,json=pipelineArgs" json:"pipeline_args,omitempty"`
-}
-
-func (m *RunPipelineRequest) Reset() { *m = RunPipelineRequest{} }
-func (m *RunPipelineRequest) String() string { return proto.CompactTextString(m) }
-func (*RunPipelineRequest) ProtoMessage() {}
-func (*RunPipelineRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{5} }
-
-type isRunPipelineRequest_Pipeline interface {
- isRunPipelineRequest_Pipeline()
-}
-
-type RunPipelineRequest_PipelineId struct {
- PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId,oneof"`
-}
-type RunPipelineRequest_EphemeralPipeline struct {
- EphemeralPipeline *Pipeline `protobuf:"bytes,2,opt,name=ephemeral_pipeline,json=ephemeralPipeline,oneof"`
-}
-
-func (*RunPipelineRequest_PipelineId) isRunPipelineRequest_Pipeline() {}
-func (*RunPipelineRequest_EphemeralPipeline) isRunPipelineRequest_Pipeline() {}
-
-func (m *RunPipelineRequest) GetPipeline() isRunPipelineRequest_Pipeline {
- if m != nil {
- return m.Pipeline
- }
- return nil
-}
-
-func (m *RunPipelineRequest) GetPipelineId() string {
- if x, ok := m.GetPipeline().(*RunPipelineRequest_PipelineId); ok {
- return x.PipelineId
- }
- return ""
-}
-
-func (m *RunPipelineRequest) GetEphemeralPipeline() *Pipeline {
- if x, ok := m.GetPipeline().(*RunPipelineRequest_EphemeralPipeline); ok {
- return x.EphemeralPipeline
- }
- return nil
-}
-
-func (m *RunPipelineRequest) GetPipelineArgs() *RunPipelineArgs {
- if m != nil {
- return m.PipelineArgs
- }
- return nil
-}
-
-// XXX_OneofFuncs is for the internal use of the proto package.
-func (*RunPipelineRequest) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
- return _RunPipelineRequest_OneofMarshaler, _RunPipelineRequest_OneofUnmarshaler, _RunPipelineRequest_OneofSizer, []interface{}{
- (*RunPipelineRequest_PipelineId)(nil),
- (*RunPipelineRequest_EphemeralPipeline)(nil),
- }
-}
-
-func _RunPipelineRequest_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
- m := msg.(*RunPipelineRequest)
- // pipeline
- switch x := m.Pipeline.(type) {
- case *RunPipelineRequest_PipelineId:
- b.EncodeVarint(1<<3 | proto.WireBytes)
- b.EncodeStringBytes(x.PipelineId)
- case *RunPipelineRequest_EphemeralPipeline:
- b.EncodeVarint(2<<3 | proto.WireBytes)
- if err := b.EncodeMessage(x.EphemeralPipeline); err != nil {
- return err
- }
- case nil:
- default:
- return fmt.Errorf("RunPipelineRequest.Pipeline has unexpected type %T", x)
- }
- return nil
-}
-
-func _RunPipelineRequest_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
- m := msg.(*RunPipelineRequest)
- switch tag {
- case 1: // pipeline.pipeline_id
- if wire != proto.WireBytes {
- return true, proto.ErrInternalBadWireType
- }
- x, err := b.DecodeStringBytes()
- m.Pipeline = &RunPipelineRequest_PipelineId{x}
- return true, err
- case 2: // pipeline.ephemeral_pipeline
- if wire != proto.WireBytes {
- return true, proto.ErrInternalBadWireType
- }
- msg := new(Pipeline)
- err := b.DecodeMessage(msg)
- m.Pipeline = &RunPipelineRequest_EphemeralPipeline{msg}
- return true, err
- default:
- return false, nil
- }
-}
-
-func _RunPipelineRequest_OneofSizer(msg proto.Message) (n int) {
- m := msg.(*RunPipelineRequest)
- // pipeline
- switch x := m.Pipeline.(type) {
- case *RunPipelineRequest_PipelineId:
- n += proto.SizeVarint(1<<3 | proto.WireBytes)
- n += proto.SizeVarint(uint64(len(x.PipelineId)))
- n += len(x.PipelineId)
- case *RunPipelineRequest_EphemeralPipeline:
- s := proto.Size(x.EphemeralPipeline)
- n += proto.SizeVarint(2<<3 | proto.WireBytes)
- n += proto.SizeVarint(uint64(s))
- n += s
- case nil:
- default:
- panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
- }
- return n
-}
-
-// A request to get a saved pipeline by id.
-type GetPipelineRequest struct {
- // Caller must have READ access to the project in which this pipeline
- // is defined.
- PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId" json:"pipeline_id,omitempty"`
-}
-
-func (m *GetPipelineRequest) Reset() { *m = GetPipelineRequest{} }
-func (m *GetPipelineRequest) String() string { return proto.CompactTextString(m) }
-func (*GetPipelineRequest) ProtoMessage() {}
-func (*GetPipelineRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{6} }
-
-func (m *GetPipelineRequest) GetPipelineId() string {
- if m != nil {
- return m.PipelineId
- }
- return ""
-}
-
-// A request to list pipelines in a given project. Pipelines can be
-// filtered by name using `namePrefix`: all pipelines with names that
-// begin with `namePrefix` will be returned. Uses standard pagination:
-// `pageSize` indicates how many pipelines to return, and
-// `pageToken` comes from a previous ListPipelinesResponse to
-// indicate offset.
-type ListPipelinesRequest struct {
- // Required. The name of the project to search for pipelines. Caller
- // must have READ access to this project.
- ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
- // Pipelines with names that match this prefix should be
- // returned. If unspecified, all pipelines in the project, up to
- // `pageSize`, will be returned.
- NamePrefix string `protobuf:"bytes,2,opt,name=name_prefix,json=namePrefix" json:"name_prefix,omitempty"`
- // Number of pipelines to return at once. Defaults to 256, and max
- // is 2048.
- PageSize int32 `protobuf:"varint,3,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
- // Token to use to indicate where to start getting results.
- // If unspecified, returns the first page of results.
- PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
-}
-
-func (m *ListPipelinesRequest) Reset() { *m = ListPipelinesRequest{} }
-func (m *ListPipelinesRequest) String() string { return proto.CompactTextString(m) }
-func (*ListPipelinesRequest) ProtoMessage() {}
-func (*ListPipelinesRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{7} }
-
-func (m *ListPipelinesRequest) GetProjectId() string {
- if m != nil {
- return m.ProjectId
- }
- return ""
-}
-
-func (m *ListPipelinesRequest) GetNamePrefix() string {
- if m != nil {
- return m.NamePrefix
- }
- return ""
-}
-
-func (m *ListPipelinesRequest) GetPageSize() int32 {
- if m != nil {
- return m.PageSize
- }
- return 0
-}
-
-func (m *ListPipelinesRequest) GetPageToken() string {
- if m != nil {
- return m.PageToken
- }
- return ""
-}
-
-// The response of ListPipelines. Contains at most `pageSize`
-// pipelines. If it contains `pageSize` pipelines, and more pipelines
-// exist, then `nextPageToken` will be populated and should be
-// used as the `pageToken` argument to a subsequent ListPipelines
-// request.
-type ListPipelinesResponse struct {
- // The matched pipelines.
- Pipelines []*Pipeline `protobuf:"bytes,1,rep,name=pipelines" json:"pipelines,omitempty"`
- // The token to use to get the next page of results.
- NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
-}
-
-func (m *ListPipelinesResponse) Reset() { *m = ListPipelinesResponse{} }
-func (m *ListPipelinesResponse) String() string { return proto.CompactTextString(m) }
-func (*ListPipelinesResponse) ProtoMessage() {}
-func (*ListPipelinesResponse) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{8} }
-
-func (m *ListPipelinesResponse) GetPipelines() []*Pipeline {
- if m != nil {
- return m.Pipelines
- }
- return nil
-}
-
-func (m *ListPipelinesResponse) GetNextPageToken() string {
- if m != nil {
- return m.NextPageToken
- }
- return ""
-}
-
-// The request to delete a saved pipeline by ID.
-type DeletePipelineRequest struct {
- // Caller must have WRITE access to the project in which this pipeline
- // is defined.
- PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId" json:"pipeline_id,omitempty"`
-}
-
-func (m *DeletePipelineRequest) Reset() { *m = DeletePipelineRequest{} }
-func (m *DeletePipelineRequest) String() string { return proto.CompactTextString(m) }
-func (*DeletePipelineRequest) ProtoMessage() {}
-func (*DeletePipelineRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{9} }
-
-func (m *DeletePipelineRequest) GetPipelineId() string {
- if m != nil {
- return m.PipelineId
- }
- return ""
-}
-
-// Request to get controller configuation. Should only be used
-// by VMs created by the Pipelines Service and not by end users.
-type GetControllerConfigRequest struct {
- // The operation to retrieve controller configuration for.
- OperationId string `protobuf:"bytes,1,opt,name=operation_id,json=operationId" json:"operation_id,omitempty"`
- ValidationToken uint64 `protobuf:"varint,2,opt,name=validation_token,json=validationToken" json:"validation_token,omitempty"`
-}
-
-func (m *GetControllerConfigRequest) Reset() { *m = GetControllerConfigRequest{} }
-func (m *GetControllerConfigRequest) String() string { return proto.CompactTextString(m) }
-func (*GetControllerConfigRequest) ProtoMessage() {}
-func (*GetControllerConfigRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{10} }
-
-func (m *GetControllerConfigRequest) GetOperationId() string {
- if m != nil {
- return m.OperationId
- }
- return ""
-}
-
-func (m *GetControllerConfigRequest) GetValidationToken() uint64 {
- if m != nil {
- return m.ValidationToken
- }
- return 0
-}
-
-// Stores the information that the controller will fetch from the
-// server in order to run. Should only be used by VMs created by the
-// Pipelines Service and not by end users.
-type ControllerConfig struct {
- Image string `protobuf:"bytes,1,opt,name=image" json:"image,omitempty"`
- Cmd string `protobuf:"bytes,2,opt,name=cmd" json:"cmd,omitempty"`
- GcsLogPath string `protobuf:"bytes,3,opt,name=gcs_log_path,json=gcsLogPath" json:"gcs_log_path,omitempty"`
- MachineType string `protobuf:"bytes,4,opt,name=machine_type,json=machineType" json:"machine_type,omitempty"`
- Vars map[string]string `protobuf:"bytes,5,rep,name=vars" json:"vars,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
- Disks map[string]string `protobuf:"bytes,6,rep,name=disks" json:"disks,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
- GcsSources map[string]*ControllerConfig_RepeatedString `protobuf:"bytes,7,rep,name=gcs_sources,json=gcsSources" json:"gcs_sources,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
- GcsSinks map[string]*ControllerConfig_RepeatedString `protobuf:"bytes,8,rep,name=gcs_sinks,json=gcsSinks" json:"gcs_sinks,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
-}
-
-func (m *ControllerConfig) Reset() { *m = ControllerConfig{} }
-func (m *ControllerConfig) String() string { return proto.CompactTextString(m) }
-func (*ControllerConfig) ProtoMessage() {}
-func (*ControllerConfig) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{11} }
-
-func (m *ControllerConfig) GetImage() string {
- if m != nil {
- return m.Image
- }
- return ""
-}
-
-func (m *ControllerConfig) GetCmd() string {
- if m != nil {
- return m.Cmd
- }
- return ""
-}
-
-func (m *ControllerConfig) GetGcsLogPath() string {
- if m != nil {
- return m.GcsLogPath
- }
- return ""
-}
-
-func (m *ControllerConfig) GetMachineType() string {
- if m != nil {
- return m.MachineType
- }
- return ""
-}
-
-func (m *ControllerConfig) GetVars() map[string]string {
- if m != nil {
- return m.Vars
- }
- return nil
-}
-
-func (m *ControllerConfig) GetDisks() map[string]string {
- if m != nil {
- return m.Disks
- }
- return nil
-}
-
-func (m *ControllerConfig) GetGcsSources() map[string]*ControllerConfig_RepeatedString {
- if m != nil {
- return m.GcsSources
- }
- return nil
-}
-
-func (m *ControllerConfig) GetGcsSinks() map[string]*ControllerConfig_RepeatedString {
- if m != nil {
- return m.GcsSinks
- }
- return nil
-}
-
-type ControllerConfig_RepeatedString struct {
- Values []string `protobuf:"bytes,1,rep,name=values" json:"values,omitempty"`
-}
-
-func (m *ControllerConfig_RepeatedString) Reset() { *m = ControllerConfig_RepeatedString{} }
-func (m *ControllerConfig_RepeatedString) String() string { return proto.CompactTextString(m) }
-func (*ControllerConfig_RepeatedString) ProtoMessage() {}
-func (*ControllerConfig_RepeatedString) Descriptor() ([]byte, []int) {
- return fileDescriptor0, []int{11, 0}
-}
-
-func (m *ControllerConfig_RepeatedString) GetValues() []string {
- if m != nil {
- return m.Values
- }
- return nil
-}
-
-// Stores the list of events and times they occured for major events in job
-// execution.
-type TimestampEvent struct {
- // String indicating the type of event
- Description string `protobuf:"bytes,1,opt,name=description" json:"description,omitempty"`
- // The time this event occured.
- Timestamp *google_protobuf4.Timestamp `protobuf:"bytes,2,opt,name=timestamp" json:"timestamp,omitempty"`
-}
-
-func (m *TimestampEvent) Reset() { *m = TimestampEvent{} }
-func (m *TimestampEvent) String() string { return proto.CompactTextString(m) }
-func (*TimestampEvent) ProtoMessage() {}
-func (*TimestampEvent) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{12} }
-
-func (m *TimestampEvent) GetDescription() string {
- if m != nil {
- return m.Description
- }
- return ""
-}
-
-func (m *TimestampEvent) GetTimestamp() *google_protobuf4.Timestamp {
- if m != nil {
- return m.Timestamp
- }
- return nil
-}
-
-// Request to set operation status. Should only be used by VMs
-// created by the Pipelines Service and not by end users.
-type SetOperationStatusRequest struct {
- OperationId string `protobuf:"bytes,1,opt,name=operation_id,json=operationId" json:"operation_id,omitempty"`
- TimestampEvents []*TimestampEvent `protobuf:"bytes,2,rep,name=timestamp_events,json=timestampEvents" json:"timestamp_events,omitempty"`
- ErrorCode google_rpc1.Code `protobuf:"varint,3,opt,name=error_code,json=errorCode,enum=google.rpc.Code" json:"error_code,omitempty"`
- ErrorMessage string `protobuf:"bytes,4,opt,name=error_message,json=errorMessage" json:"error_message,omitempty"`
- ValidationToken uint64 `protobuf:"varint,5,opt,name=validation_token,json=validationToken" json:"validation_token,omitempty"`
-}
-
-func (m *SetOperationStatusRequest) Reset() { *m = SetOperationStatusRequest{} }
-func (m *SetOperationStatusRequest) String() string { return proto.CompactTextString(m) }
-func (*SetOperationStatusRequest) ProtoMessage() {}
-func (*SetOperationStatusRequest) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{13} }
-
-func (m *SetOperationStatusRequest) GetOperationId() string {
- if m != nil {
- return m.OperationId
- }
- return ""
-}
-
-func (m *SetOperationStatusRequest) GetTimestampEvents() []*TimestampEvent {
- if m != nil {
- return m.TimestampEvents
- }
- return nil
-}
-
-func (m *SetOperationStatusRequest) GetErrorCode() google_rpc1.Code {
- if m != nil {
- return m.ErrorCode
- }
- return google_rpc1.Code_OK
-}
-
-func (m *SetOperationStatusRequest) GetErrorMessage() string {
- if m != nil {
- return m.ErrorMessage
- }
- return ""
-}
-
-func (m *SetOperationStatusRequest) GetValidationToken() uint64 {
- if m != nil {
- return m.ValidationToken
- }
- return 0
-}
-
-// A Google Cloud Service Account.
-type ServiceAccount struct {
- // Email address of the service account. Defaults to `default`,
- // which uses the compute service account associated with the project.
- Email string `protobuf:"bytes,1,opt,name=email" json:"email,omitempty"`
- // List of scopes to be enabled for this service account on the VM.
- // The following scopes are automatically included:
- //
- // * https://www.googleapis.com/auth/compute
- // * https://www.googleapis.com/auth/devstorage.full_control
- // * https://www.googleapis.com/auth/genomics
- // * https://www.googleapis.com/auth/logging.write
- // * https://www.googleapis.com/auth/monitoring.write
- Scopes []string `protobuf:"bytes,2,rep,name=scopes" json:"scopes,omitempty"`
-}
-
-func (m *ServiceAccount) Reset() { *m = ServiceAccount{} }
-func (m *ServiceAccount) String() string { return proto.CompactTextString(m) }
-func (*ServiceAccount) ProtoMessage() {}
-func (*ServiceAccount) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{14} }
-
-func (m *ServiceAccount) GetEmail() string {
- if m != nil {
- return m.Email
- }
- return ""
-}
-
-func (m *ServiceAccount) GetScopes() []string {
- if m != nil {
- return m.Scopes
- }
- return nil
-}
-
-// The logging options for the pipeline run.
-type LoggingOptions struct {
- // The location in Google Cloud Storage to which the pipeline logs
- // will be copied. Can be specified as a fully qualified directory
- // path, in which case logs will be output with a unique identifier
- // as the filename in that directory, or as a fully specified path,
- // which must end in `.log`, in which case that path will be
- // used, and the user must ensure that logs are not
- // overwritten. Stdout and stderr logs from the run are also
- // generated and output as `-stdout.log` and `-stderr.log`.
- GcsPath string `protobuf:"bytes,1,opt,name=gcs_path,json=gcsPath" json:"gcs_path,omitempty"`
-}
-
-func (m *LoggingOptions) Reset() { *m = LoggingOptions{} }
-func (m *LoggingOptions) String() string { return proto.CompactTextString(m) }
-func (*LoggingOptions) ProtoMessage() {}
-func (*LoggingOptions) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{15} }
-
-func (m *LoggingOptions) GetGcsPath() string {
- if m != nil {
- return m.GcsPath
- }
- return ""
-}
-
-// The system resources for the pipeline run.
-type PipelineResources struct {
- // The minimum number of cores to use. Defaults to 1.
- MinimumCpuCores int32 `protobuf:"varint,1,opt,name=minimum_cpu_cores,json=minimumCpuCores" json:"minimum_cpu_cores,omitempty"`
- // Whether to use preemptible VMs. Defaults to `false`. In order to use this,
- // must be true for both create time and run time. Cannot be true at run time
- // if false at create time.
- Preemptible bool `protobuf:"varint,2,opt,name=preemptible" json:"preemptible,omitempty"`
- // The minimum amount of RAM to use. Defaults to 3.75 (GB)
- MinimumRamGb float64 `protobuf:"fixed64,3,opt,name=minimum_ram_gb,json=minimumRamGb" json:"minimum_ram_gb,omitempty"`
- // Disks to attach.
- Disks []*PipelineResources_Disk `protobuf:"bytes,4,rep,name=disks" json:"disks,omitempty"`
- // List of Google Compute Engine availability zones to which resource
- // creation will restricted. If empty, any zone may be chosen.
- Zones []string `protobuf:"bytes,5,rep,name=zones" json:"zones,omitempty"`
- // The size of the boot disk. Defaults to 10 (GB).
- BootDiskSizeGb int32 `protobuf:"varint,6,opt,name=boot_disk_size_gb,json=bootDiskSizeGb" json:"boot_disk_size_gb,omitempty"`
- // Whether to assign an external IP to the instance. This is an experimental
- // feature that may go away. Defaults to false.
- // Corresponds to `--no_address` flag for [gcloud compute instances create]
- // (https://cloud.google.com/sdk/gcloud/reference/compute/instances/create).
- // In order to use this, must be true for both create time and run time.
- // Cannot be true at run time if false at create time. If you need to ssh into
- // a private IP VM for debugging, you can ssh to a public VM and then ssh into
- // the private VM's Internal IP. If noAddress is set, this pipeline run may
- // only load docker images from Google Container Registry and not Docker Hub.
- // ** Note: To use this option, your project must be in Google Access for
- // Private IPs Early Access Program.**
- NoAddress bool `protobuf:"varint,7,opt,name=no_address,json=noAddress" json:"no_address,omitempty"`
-}
-
-func (m *PipelineResources) Reset() { *m = PipelineResources{} }
-func (m *PipelineResources) String() string { return proto.CompactTextString(m) }
-func (*PipelineResources) ProtoMessage() {}
-func (*PipelineResources) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{16} }
-
-func (m *PipelineResources) GetMinimumCpuCores() int32 {
- if m != nil {
- return m.MinimumCpuCores
- }
- return 0
-}
-
-func (m *PipelineResources) GetPreemptible() bool {
- if m != nil {
- return m.Preemptible
- }
- return false
-}
-
-func (m *PipelineResources) GetMinimumRamGb() float64 {
- if m != nil {
- return m.MinimumRamGb
- }
- return 0
-}
-
-func (m *PipelineResources) GetDisks() []*PipelineResources_Disk {
- if m != nil {
- return m.Disks
- }
- return nil
-}
-
-func (m *PipelineResources) GetZones() []string {
- if m != nil {
- return m.Zones
- }
- return nil
-}
-
-func (m *PipelineResources) GetBootDiskSizeGb() int32 {
- if m != nil {
- return m.BootDiskSizeGb
- }
- return 0
-}
-
-func (m *PipelineResources) GetNoAddress() bool {
- if m != nil {
- return m.NoAddress
- }
- return false
-}
-
-// A Google Compute Engine disk resource specification.
-type PipelineResources_Disk struct {
- // Required. The name of the disk that can be used in the pipeline
- // parameters. Must be 1 - 63 characters.
- // The name "boot" is reserved for system use.
- Name string `protobuf:"bytes,1,opt,name=name" json:"name,omitempty"`
- // Required. The type of the disk to create.
- Type PipelineResources_Disk_Type `protobuf:"varint,2,opt,name=type,enum=google.genomics.v1alpha2.PipelineResources_Disk_Type" json:"type,omitempty"`
- // The size of the disk. Defaults to 500 (GB).
- // This field is not applicable for local SSD.
- SizeGb int32 `protobuf:"varint,3,opt,name=size_gb,json=sizeGb" json:"size_gb,omitempty"`
- // The full or partial URL of the persistent disk to attach. See
- // https://cloud.google.com/compute/docs/reference/latest/instances#resource
- // and
- // https://cloud.google.com/compute/docs/disks/persistent-disks#snapshots
- // for more details.
- Source string `protobuf:"bytes,4,opt,name=source" json:"source,omitempty"`
- // Deprecated. Disks created by the Pipelines API will be deleted at the end
- // of the pipeline run, regardless of what this field is set to.
- AutoDelete bool `protobuf:"varint,6,opt,name=auto_delete,json=autoDelete" json:"auto_delete,omitempty"`
- // Required at create time and cannot be overridden at run time.
- // Specifies the path in the docker container where files on
- // this disk should be located. For example, if `mountPoint`
- // is `/mnt/disk`, and the parameter has `localPath`
- // `inputs/file.txt`, the docker container can access the data at
- // `/mnt/disk/inputs/file.txt`.
- MountPoint string `protobuf:"bytes,8,opt,name=mount_point,json=mountPoint" json:"mount_point,omitempty"`
-}
-
-func (m *PipelineResources_Disk) Reset() { *m = PipelineResources_Disk{} }
-func (m *PipelineResources_Disk) String() string { return proto.CompactTextString(m) }
-func (*PipelineResources_Disk) ProtoMessage() {}
-func (*PipelineResources_Disk) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{16, 0} }
-
-func (m *PipelineResources_Disk) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
-}
-
-func (m *PipelineResources_Disk) GetType() PipelineResources_Disk_Type {
- if m != nil {
- return m.Type
- }
- return PipelineResources_Disk_TYPE_UNSPECIFIED
-}
-
-func (m *PipelineResources_Disk) GetSizeGb() int32 {
- if m != nil {
- return m.SizeGb
- }
- return 0
-}
-
-func (m *PipelineResources_Disk) GetSource() string {
- if m != nil {
- return m.Source
- }
- return ""
-}
-
-func (m *PipelineResources_Disk) GetAutoDelete() bool {
- if m != nil {
- return m.AutoDelete
- }
- return false
-}
-
-func (m *PipelineResources_Disk) GetMountPoint() string {
- if m != nil {
- return m.MountPoint
- }
- return ""
-}
-
-// Parameters facilitate setting and delivering data into the
-// pipeline's execution environment. They are defined at create time,
-// with optional defaults, and can be overridden at run time.
-//
-// If `localCopy` is unset, then the parameter specifies a string that
-// is passed as-is into the pipeline, as the value of the environment
-// variable with the given name. A default value can be optionally
-// specified at create time. The default can be overridden at run time
-// using the inputs map. If no default is given, a value must be
-// supplied at runtime.
-//
-// If `localCopy` is defined, then the parameter specifies a data
-// source or sink, both in Google Cloud Storage and on the Docker container
-// where the pipeline computation is run. The [service account associated with
-// the Pipeline][google.genomics.v1alpha2.RunPipelineArgs.service_account] (by
-// default the project's Compute Engine service account) must have access to the
-// Google Cloud Storage paths.
-//
-// At run time, the Google Cloud Storage paths can be overridden if a default
-// was provided at create time, or must be set otherwise. The pipeline runner
-// should add a key/value pair to either the inputs or outputs map. The
-// indicated data copies will be carried out before/after pipeline execution,
-// just as if the corresponding arguments were provided to `gsutil cp`.
-//
-// For example: Given the following `PipelineParameter`, specified
-// in the `inputParameters` list:
-//
-// ```
-// {name: "input_file", localCopy: {path: "file.txt", disk: "pd1"}}
-// ```
-//
-// where `disk` is defined in the `PipelineResources` object as:
-//
-// ```
-// {name: "pd1", mountPoint: "/mnt/disk/"}
-// ```
-//
-// We create a disk named `pd1`, mount it on the host VM, and map
-// `/mnt/pd1` to `/mnt/disk` in the docker container. At
-// runtime, an entry for `input_file` would be required in the inputs
-// map, such as:
-//
-// ```
-// inputs["input_file"] = "gs://my-bucket/bar.txt"
-// ```
-//
-// This would generate the following gsutil call:
-//
-// ```
-// gsutil cp gs://my-bucket/bar.txt /mnt/pd1/file.txt
-// ```
-//
-// The file `/mnt/pd1/file.txt` maps to `/mnt/disk/file.txt` in the
-// Docker container. Acceptable paths are:
-//
-// <table>
-// <thead>
-// <tr><th>Google Cloud storage path</th><th>Local path</th></tr>
-// </thead>
-// <tbody>
-// <tr><td>file</td><td>file</td></tr>
-// <tr><td>glob</td><td>directory</td></tr>
-// </tbody>
-// </table>
-//
-// For outputs, the direction of the copy is reversed:
-//
-// ```
-// gsutil cp /mnt/disk/file.txt gs://my-bucket/bar.txt
-// ```
-//
-// Acceptable paths are:
-//
-// <table>
-// <thead>
-// <tr><th>Local path</th><th>Google Cloud Storage path</th></tr>
-// </thead>
-// <tbody>
-// <tr><td>file</td><td>file</td></tr>
-// <tr>
-// <td>file</td>
-// <td>directory - directory must already exist</td>
-// </tr>
-// <tr>
-// <td>glob</td>
-// <td>directory - directory will be created if it doesn't exist</td></tr>
-// </tbody>
-// </table>
-//
-// One restriction due to docker limitations, is that for outputs that are found
-// on the boot disk, the local path cannot be a glob and must be a file.
-type PipelineParameter struct {
- // Required. Name of the parameter - the pipeline runner uses this string
- // as the key to the input and output maps in RunPipeline.
- Name string `protobuf:"bytes,1,opt,name=name" json:"name,omitempty"`
- // Human-readable description.
- Description string `protobuf:"bytes,2,opt,name=description" json:"description,omitempty"`
- // The default value for this parameter. Can be overridden at runtime.
- // If `localCopy` is present, then this must be a Google Cloud Storage path
- // beginning with `gs://`.
- DefaultValue string `protobuf:"bytes,5,opt,name=default_value,json=defaultValue" json:"default_value,omitempty"`
- // If present, this parameter is marked for copying to and from the VM.
- // `LocalCopy` indicates where on the VM the file should be. The value
- // given to this parameter (either at runtime or using `defaultValue`)
- // must be the remote path where the file should be.
- LocalCopy *PipelineParameter_LocalCopy `protobuf:"bytes,6,opt,name=local_copy,json=localCopy" json:"local_copy,omitempty"`
-}
-
-func (m *PipelineParameter) Reset() { *m = PipelineParameter{} }
-func (m *PipelineParameter) String() string { return proto.CompactTextString(m) }
-func (*PipelineParameter) ProtoMessage() {}
-func (*PipelineParameter) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{17} }
-
-func (m *PipelineParameter) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
-}
-
-func (m *PipelineParameter) GetDescription() string {
- if m != nil {
- return m.Description
- }
- return ""
-}
-
-func (m *PipelineParameter) GetDefaultValue() string {
- if m != nil {
- return m.DefaultValue
- }
- return ""
-}
-
-func (m *PipelineParameter) GetLocalCopy() *PipelineParameter_LocalCopy {
- if m != nil {
- return m.LocalCopy
- }
- return nil
-}
-
-// LocalCopy defines how a remote file should be copied to and from the VM.
-type PipelineParameter_LocalCopy struct {
- // Required. The path within the user's docker container where
- // this input should be localized to and from, relative to the specified
- // disk's mount point. For example: file.txt,
- Path string `protobuf:"bytes,1,opt,name=path" json:"path,omitempty"`
- // Required. The name of the disk where this parameter is
- // located. Can be the name of one of the disks specified in the
- // Resources field, or "boot", which represents the Docker
- // instance's boot disk and has a mount point of `/`.
- Disk string `protobuf:"bytes,2,opt,name=disk" json:"disk,omitempty"`
-}
-
-func (m *PipelineParameter_LocalCopy) Reset() { *m = PipelineParameter_LocalCopy{} }
-func (m *PipelineParameter_LocalCopy) String() string { return proto.CompactTextString(m) }
-func (*PipelineParameter_LocalCopy) ProtoMessage() {}
-func (*PipelineParameter_LocalCopy) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{17, 0} }
-
-func (m *PipelineParameter_LocalCopy) GetPath() string {
- if m != nil {
- return m.Path
- }
- return ""
-}
-
-func (m *PipelineParameter_LocalCopy) GetDisk() string {
- if m != nil {
- return m.Disk
- }
- return ""
-}
-
-// The Docker execuctor specification.
-type DockerExecutor struct {
- // Required. Image name from either Docker Hub or Google Container Registry.
- // Users that run pipelines must have READ access to the image.
- ImageName string `protobuf:"bytes,1,opt,name=image_name,json=imageName" json:"image_name,omitempty"`
- // Required. The command or newline delimited script to run. The command
- // string will be executed within a bash shell.
- //
- // If the command exits with a non-zero exit code, output parameter
- // de-localization will be skipped and the pipeline operation's
- // [`error`][google.longrunning.Operation.error] field will be populated.
- //
- // Maximum command string length is 16384.
- Cmd string `protobuf:"bytes,2,opt,name=cmd" json:"cmd,omitempty"`
-}
-
-func (m *DockerExecutor) Reset() { *m = DockerExecutor{} }
-func (m *DockerExecutor) String() string { return proto.CompactTextString(m) }
-func (*DockerExecutor) ProtoMessage() {}
-func (*DockerExecutor) Descriptor() ([]byte, []int) { return fileDescriptor0, []int{18} }
-
-func (m *DockerExecutor) GetImageName() string {
- if m != nil {
- return m.ImageName
- }
- return ""
-}
-
-func (m *DockerExecutor) GetCmd() string {
- if m != nil {
- return m.Cmd
- }
- return ""
-}
-
-func init() {
- proto.RegisterType((*ComputeEngine)(nil), "google.genomics.v1alpha2.ComputeEngine")
- proto.RegisterType((*RuntimeMetadata)(nil), "google.genomics.v1alpha2.RuntimeMetadata")
- proto.RegisterType((*Pipeline)(nil), "google.genomics.v1alpha2.Pipeline")
- proto.RegisterType((*CreatePipelineRequest)(nil), "google.genomics.v1alpha2.CreatePipelineRequest")
- proto.RegisterType((*RunPipelineArgs)(nil), "google.genomics.v1alpha2.RunPipelineArgs")
- proto.RegisterType((*RunPipelineRequest)(nil), "google.genomics.v1alpha2.RunPipelineRequest")
- proto.RegisterType((*GetPipelineRequest)(nil), "google.genomics.v1alpha2.GetPipelineRequest")
- proto.RegisterType((*ListPipelinesRequest)(nil), "google.genomics.v1alpha2.ListPipelinesRequest")
- proto.RegisterType((*ListPipelinesResponse)(nil), "google.genomics.v1alpha2.ListPipelinesResponse")
- proto.RegisterType((*DeletePipelineRequest)(nil), "google.genomics.v1alpha2.DeletePipelineRequest")
- proto.RegisterType((*GetControllerConfigRequest)(nil), "google.genomics.v1alpha2.GetControllerConfigRequest")
- proto.RegisterType((*ControllerConfig)(nil), "google.genomics.v1alpha2.ControllerConfig")
- proto.RegisterType((*ControllerConfig_RepeatedString)(nil), "google.genomics.v1alpha2.ControllerConfig.RepeatedString")
- proto.RegisterType((*TimestampEvent)(nil), "google.genomics.v1alpha2.TimestampEvent")
- proto.RegisterType((*SetOperationStatusRequest)(nil), "google.genomics.v1alpha2.SetOperationStatusRequest")
- proto.RegisterType((*ServiceAccount)(nil), "google.genomics.v1alpha2.ServiceAccount")
- proto.RegisterType((*LoggingOptions)(nil), "google.genomics.v1alpha2.LoggingOptions")
- proto.RegisterType((*PipelineResources)(nil), "google.genomics.v1alpha2.PipelineResources")
- proto.RegisterType((*PipelineResources_Disk)(nil), "google.genomics.v1alpha2.PipelineResources.Disk")
- proto.RegisterType((*PipelineParameter)(nil), "google.genomics.v1alpha2.PipelineParameter")
- proto.RegisterType((*PipelineParameter_LocalCopy)(nil), "google.genomics.v1alpha2.PipelineParameter.LocalCopy")
- proto.RegisterType((*DockerExecutor)(nil), "google.genomics.v1alpha2.DockerExecutor")
- proto.RegisterEnum("google.genomics.v1alpha2.PipelineResources_Disk_Type", PipelineResources_Disk_Type_name, PipelineResources_Disk_Type_value)
-}
-
-// Reference imports to suppress errors if they are not otherwise used.
-var _ context.Context
-var _ grpc.ClientConn
-
-// This is a compile-time assertion to ensure that this generated file
-// is compatible with the grpc package it is being compiled against.
-const _ = grpc.SupportPackageIsVersion4
-
-// Client API for PipelinesV1Alpha2 service
-
-type PipelinesV1Alpha2Client interface {
- // Creates a pipeline that can be run later. Create takes a Pipeline that
- // has all fields other than `pipelineId` populated, and then returns
- // the same pipeline with `pipelineId` populated. This id can be used
- // to run the pipeline.
- //
- // Caller must have WRITE permission to the project.
- CreatePipeline(ctx context.Context, in *CreatePipelineRequest, opts ...grpc.CallOption) (*Pipeline, error)
- // Runs a pipeline. If `pipelineId` is specified in the request, then
- // run a saved pipeline. If `ephemeralPipeline` is specified, then run
- // that pipeline once without saving a copy.
- //
- // The caller must have READ permission to the project where the pipeline
- // is stored and WRITE permission to the project where the pipeline will be
- // run, as VMs will be created and storage will be used.
- RunPipeline(ctx context.Context, in *RunPipelineRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error)
- // Retrieves a pipeline based on ID.
- //
- // Caller must have READ permission to the project.
- GetPipeline(ctx context.Context, in *GetPipelineRequest, opts ...grpc.CallOption) (*Pipeline, error)
- // Lists pipelines.
- //
- // Caller must have READ permission to the project.
- ListPipelines(ctx context.Context, in *ListPipelinesRequest, opts ...grpc.CallOption) (*ListPipelinesResponse, error)
- // Deletes a pipeline based on ID.
- //
- // Caller must have WRITE permission to the project.
- DeletePipeline(ctx context.Context, in *DeletePipelineRequest, opts ...grpc.CallOption) (*google_protobuf2.Empty, error)
- // Gets controller configuration information. Should only be called
- // by VMs created by the Pipelines Service and not by end users.
- GetControllerConfig(ctx context.Context, in *GetControllerConfigRequest, opts ...grpc.CallOption) (*ControllerConfig, error)
- // Sets status of a given operation. Any new timestamps (as determined by
- // description) are appended to TimestampEvents. Should only be called by VMs
- // created by the Pipelines Service and not by end users.
- SetOperationStatus(ctx context.Context, in *SetOperationStatusRequest, opts ...grpc.CallOption) (*google_protobuf2.Empty, error)
-}
-
-type pipelinesV1Alpha2Client struct {
- cc *grpc.ClientConn
-}
-
-func NewPipelinesV1Alpha2Client(cc *grpc.ClientConn) PipelinesV1Alpha2Client {
- return &pipelinesV1Alpha2Client{cc}
-}
-
-func (c *pipelinesV1Alpha2Client) CreatePipeline(ctx context.Context, in *CreatePipelineRequest, opts ...grpc.CallOption) (*Pipeline, error) {
- out := new(Pipeline)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/CreatePipeline", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) RunPipeline(ctx context.Context, in *RunPipelineRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error) {
- out := new(google_longrunning.Operation)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/RunPipeline", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) GetPipeline(ctx context.Context, in *GetPipelineRequest, opts ...grpc.CallOption) (*Pipeline, error) {
- out := new(Pipeline)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/GetPipeline", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) ListPipelines(ctx context.Context, in *ListPipelinesRequest, opts ...grpc.CallOption) (*ListPipelinesResponse, error) {
- out := new(ListPipelinesResponse)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/ListPipelines", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) DeletePipeline(ctx context.Context, in *DeletePipelineRequest, opts ...grpc.CallOption) (*google_protobuf2.Empty, error) {
- out := new(google_protobuf2.Empty)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/DeletePipeline", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) GetControllerConfig(ctx context.Context, in *GetControllerConfigRequest, opts ...grpc.CallOption) (*ControllerConfig, error) {
- out := new(ControllerConfig)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/GetControllerConfig", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-func (c *pipelinesV1Alpha2Client) SetOperationStatus(ctx context.Context, in *SetOperationStatusRequest, opts ...grpc.CallOption) (*google_protobuf2.Empty, error) {
- out := new(google_protobuf2.Empty)
- err := grpc.Invoke(ctx, "/google.genomics.v1alpha2.PipelinesV1Alpha2/SetOperationStatus", in, out, c.cc, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
-}
-
-// Server API for PipelinesV1Alpha2 service
-
-type PipelinesV1Alpha2Server interface {
- // Creates a pipeline that can be run later. Create takes a Pipeline that
- // has all fields other than `pipelineId` populated, and then returns
- // the same pipeline with `pipelineId` populated. This id can be used
- // to run the pipeline.
- //
- // Caller must have WRITE permission to the project.
- CreatePipeline(context.Context, *CreatePipelineRequest) (*Pipeline, error)
- // Runs a pipeline. If `pipelineId` is specified in the request, then
- // run a saved pipeline. If `ephemeralPipeline` is specified, then run
- // that pipeline once without saving a copy.
- //
- // The caller must have READ permission to the project where the pipeline
- // is stored and WRITE permission to the project where the pipeline will be
- // run, as VMs will be created and storage will be used.
- RunPipeline(context.Context, *RunPipelineRequest) (*google_longrunning.Operation, error)
- // Retrieves a pipeline based on ID.
- //
- // Caller must have READ permission to the project.
- GetPipeline(context.Context, *GetPipelineRequest) (*Pipeline, error)
- // Lists pipelines.
- //
- // Caller must have READ permission to the project.
- ListPipelines(context.Context, *ListPipelinesRequest) (*ListPipelinesResponse, error)
- // Deletes a pipeline based on ID.
- //
- // Caller must have WRITE permission to the project.
- DeletePipeline(context.Context, *DeletePipelineRequest) (*google_protobuf2.Empty, error)
- // Gets controller configuration information. Should only be called
- // by VMs created by the Pipelines Service and not by end users.
- GetControllerConfig(context.Context, *GetControllerConfigRequest) (*ControllerConfig, error)
- // Sets status of a given operation. Any new timestamps (as determined by
- // description) are appended to TimestampEvents. Should only be called by VMs
- // created by the Pipelines Service and not by end users.
- SetOperationStatus(context.Context, *SetOperationStatusRequest) (*google_protobuf2.Empty, error)
-}
-
-func RegisterPipelinesV1Alpha2Server(s *grpc.Server, srv PipelinesV1Alpha2Server) {
- s.RegisterService(&_PipelinesV1Alpha2_serviceDesc, srv)
-}
-
-func _PipelinesV1Alpha2_CreatePipeline_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(CreatePipelineRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).CreatePipeline(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/CreatePipeline",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).CreatePipeline(ctx, req.(*CreatePipelineRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_RunPipeline_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(RunPipelineRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).RunPipeline(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/RunPipeline",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).RunPipeline(ctx, req.(*RunPipelineRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_GetPipeline_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(GetPipelineRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).GetPipeline(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/GetPipeline",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).GetPipeline(ctx, req.(*GetPipelineRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_ListPipelines_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(ListPipelinesRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).ListPipelines(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/ListPipelines",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).ListPipelines(ctx, req.(*ListPipelinesRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_DeletePipeline_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(DeletePipelineRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).DeletePipeline(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/DeletePipeline",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).DeletePipeline(ctx, req.(*DeletePipelineRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_GetControllerConfig_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(GetControllerConfigRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).GetControllerConfig(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/GetControllerConfig",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).GetControllerConfig(ctx, req.(*GetControllerConfigRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-func _PipelinesV1Alpha2_SetOperationStatus_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(SetOperationStatusRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(PipelinesV1Alpha2Server).SetOperationStatus(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1alpha2.PipelinesV1Alpha2/SetOperationStatus",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(PipelinesV1Alpha2Server).SetOperationStatus(ctx, req.(*SetOperationStatusRequest))
- }
- return interceptor(ctx, in, info, handler)
-}
-
-var _PipelinesV1Alpha2_serviceDesc = grpc.ServiceDesc{
- ServiceName: "google.genomics.v1alpha2.PipelinesV1Alpha2",
- HandlerType: (*PipelinesV1Alpha2Server)(nil),
- Methods: []grpc.MethodDesc{
- {
- MethodName: "CreatePipeline",
- Handler: _PipelinesV1Alpha2_CreatePipeline_Handler,
- },
- {
- MethodName: "RunPipeline",
- Handler: _PipelinesV1Alpha2_RunPipeline_Handler,
- },
- {
- MethodName: "GetPipeline",
- Handler: _PipelinesV1Alpha2_GetPipeline_Handler,
- },
- {
- MethodName: "ListPipelines",
- Handler: _PipelinesV1Alpha2_ListPipelines_Handler,
- },
- {
- MethodName: "DeletePipeline",
- Handler: _PipelinesV1Alpha2_DeletePipeline_Handler,
- },
- {
- MethodName: "GetControllerConfig",
- Handler: _PipelinesV1Alpha2_GetControllerConfig_Handler,
- },
- {
- MethodName: "SetOperationStatus",
- Handler: _PipelinesV1Alpha2_SetOperationStatus_Handler,
- },
- },
- Streams: []grpc.StreamDesc{},
- Metadata: "google/genomics/v1alpha2/pipelines.proto",
-}
-
-func init() { proto.RegisterFile("google/genomics/v1alpha2/pipelines.proto", fileDescriptor0) }
-
-var fileDescriptor0 = []byte{
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