src/Tools/mrcImage/mrcImageSuperResolution/src/mrcImageSuperResolution.html

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   3 <TITLE>mrcImageSuperResolution</TITLE>
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   5 <BODY>
   6 <H1>mrcImageSuperResolution</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageSuperResolution
  10 Options:
  11     [-I[nput]            InOriginal          (NULL      ).as(inFile              ) ] :Essential :Input: Original
  12     [-i[nput]            InPrevious          (NULL      ).as(inFile              ) ] :Essential :Input: Previous
  13     [-i[nput]c[ounter]   FFTInCount          (NULL      ).as(inFile              ) ] :Optional  :Input: CounterforWeight FourierSpace
  14     [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :Output: Next
  15     [-t[ime]             t                   (1         ).as(Integer             ) ] :Optional  :Number of time: Iteration(Real Space)
  16     [-fromp[oint]1       x00                 (0         ).as(Integer             )
  17                          y00                 (0         ).as(Integer             )
  18                          z00                 (0         ).as(Integer             ) ] :Optional  :First value near origin of coordinates: x00[pixel] y00[pixel] z00[pixel]
  19     [-top[oint]1         x01                 (2         ).as(Integer             )
  20                          y01                 (2         ).as(Integer             )
  21                          z01                 (2         ).as(Integer             ) ] :Optional  :target value: x01[pixel] y01[pixel] z01[pixel]
  22     [-fromp[oint]2       x10                 (0         ).as(Integer             )
  23                          y10                 (0         ).as(Integer             )
  24                          z10                 (0         ).as(Integer             ) ] :Optional  :First value far from origin of coordinates: x10[pixel] y10[pixel] z10[pixel]
  25     [-top[oint]2         x11                 (0         ).as(Integer             )
  26                          y11                 (0         ).as(Integer             )
  27                          z11                 (0         ).as(Integer             ) ] :Optional  :target value: x11[pixel] y11[pixel] z11[pixel]
  28     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  29     [-m[ode]             mode                (0         ).as(Integer             ) ] :Essential :RealSpaceCalculating
  30     [-LabelingMode       labelingmode        (0         ).as(Integer             ) ] :Optional  :LabelingMode
  31     [-max[value]         max                 (800       ).as(Integer             ) ] :Optional  :Density Max value:Support Constraint()
  32     [-min[value]         min                 (200       ).as(Integer             ) ] :Optional  :Density Min value:Support Constraint()
  33     [-sh[ape]            shape               (0         ).as(Integer             ) ] :Optional  :Shape:0(Rectangule),1(Globe)
  34     [-h[alf]v[alue]p[oint]hvp                 (0.0       ).as(Real                ) ] :Optional  :Half value point(/[A])
  35     [-Inverse                                                                      ] :Optional  :Inverse
  36     [-nM[olecule]        nMolecule           (1         ).as(Integer             ) ] :Optional  :Number of Molecule
  37     [-M[olecularWeight]  MolecularWeight     (80000     ).as(Integer             ) ] :Optional  :MolecularWeight
  38     [-D[ensity]          Density             (1.35      ).as(Real                ) ] :Optional  :Density(g/cm3)
  39     [-counter            incounter           (3.0       ).as(Real                ) ] :Optional  :Counter(Fourier Space)
  40     [-d[elta]Density     deltaDens           (100.0     ).as(Real                ) ] :Optional  :Delta (Convergence)
  41     [-d[elta]Area        deltaArea           (100.0     ).as(Real                ) ] :Optional  :Area (Convergence)
  42     [-sub[traction]      sub                 (0.2       ).as(Real                ) ] :Optional  :Subtraction(Convergence)
  43     [-ratio              ratio               (0.3       ).as(Real                ) ] :Optional  :Ratio(Convergence)
  44     [-t[ime]max          tmax                (1000      ).as(Integer             ) ] :Optional  :Time Max(Convergence)
  45     [-w[eight]d[elta]    WeightDelta         (0.1       ).as(Real                ) ] :Optional  :WeightDelta(Fourier Space)
  46     [-w[eight]m[ax]      WeightMax           (2         ).as(Integer             ) ] :Optional  :WeightMax(Fourier Space)
  47     [-Subtraction                                                                  ] :Optional  :Subtraction(Real Space)
  48 ----- Additional Usage -----
  49 -m Option
  50      1 : AreaAndLocation
  51      2 : Density
  52      3 : AreaAndLocationandDensity
  53     +4 : Convergence(Option)
  54    +16 : NonnegativeMode(before RealSpaceConstraint)
  55    +32 : Binarization(before RealSpaceConstraint)
  56    +64 : Labeling
  57   +128 : SixOrientation
  58   +256 : LowpassfilterMode(-hvp is required)
  59   +512 : CounterMode(-ic is required)
  60 -----------------------------------------------------
  61 -Inverse
  62 If high density means the location of protein, -Inverse is required for volume calculation.
  63 -wm and -wd
  64 weight = counter / (weightmax + counter)
  65 weightmax -> 0 (weightdelt by weightdelta)
  66 -LabelinMode
  67      0 : TheLargestLabelingSearch
  68      1 : SomeVolumeLabelingSearch
  69 -Subtraction
  70 Real Space Constraint for desolving edge problem
  71
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