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Takuo Yasunaga [Sun, 12 May 2013 07:01:29 +0000 (16:01 +0900)]
compilineg : eosPoint and eosList
new file: include/eosList.h
modified: include/eosPoint.h
modified: src/Objects/DataManip/transform/src/lmrc3Dto2D.c
Takuo Yasunaga [Wed, 8 May 2013 08:40:19 +0000 (17:40 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Tue, 7 May 2013 20:01:07 +0000 (05:01 +0900)]
// Modify git command
modified: Makefile
// Create a new command for fitting between two 2D/3D objects using PCA
new file: mrcImageShapePCAFit
new file: src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.c
new file: src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.h
modified: src/Tools/mrcImage/mrcImageShapePCA/src/mrcImageShapePCA.c
// Modify Array for PCA. Add average information of each xi
modified: src/Objects/General/Array/inc/Array.h
modified: src/Objects/General/Array/src/arrayPCA.c
modified: src/Objects/General/Array/src/larray2mrc.c
// Modify Matrix3D for PCA. Add matrix3DfromArray
modified: src/Objects/General/Matrix3D/inc/Matrix3D.h
modified: src/Objects/General/Matrix3D/src/matrix3DEulerAngleGet.c
modified: src/Objects/General/Matrix3D/src/matrix3DUtil.c
// Modify pdbPCA for changing arrayPCA
modified: src/Tools/pdbUtil/pdbPCA/src/pdbPCA.c
// Bebuilding
modified: hostdepend/X86MAC64/...
Takuo Yasunaga [Sun, 5 May 2013 03:43:13 +0000 (12:43 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Sun, 5 May 2013 03:42:09 +0000 (12:42 +0900)]
modified: .gitignore
modified: Makefile
new file: examples
Takuo Yasunaga [Sun, 5 May 2013 02:58:20 +0000 (11:58 +0900)]
Merge branch 'master' of git://git.sourceforge.jp/gitroot/eos/base
Conflicts:
util/X86MAC64
Takuo Yasunaga [Sun, 5 May 2013 02:55:44 +0000 (11:55 +0900)]
new file: .gitignore
new file: doc
new file: objects
new file: pione
Takuo Yasunaga [Sun, 5 May 2013 02:20:45 +0000 (11:20 +0900)]
Add util/XXXX , doc , objects as links
Takuo Yasunaga [Sun, 5 May 2013 02:05:13 +0000 (11:05 +0900)]
Delete wrong files
Takuo Yasunaga [Sun, 5 May 2013 01:24:28 +0000 (10:24 +0900)]
modified: sbin/modifyutil
Takuo Yasunaga [Sun, 5 May 2013 01:20:45 +0000 (10:20 +0900)]
Add hostdepend/X86MAC64
Takuo Yasunaga [Sat, 4 May 2013 00:04:35 +0000 (09:04 +0900)]
modified: Makefile
Takuo Yasunaga [Fri, 3 May 2013 20:42:19 +0000 (05:42 +0900)]
modified: Makefile
modified: mrcImageNoiseReductionByRelaxation
modified: src/Tools/Config/Define.inc
Takuo Yasunaga [Mon, 29 Apr 2013 19:16:04 +0000 (04:16 +0900)]
Modified: Makefile
Add --tags for git-push
Takuo Yasunaga [Mon, 29 Apr 2013 07:57:36 +0000 (16:57 +0900)]
Develope a new tool: mrcImageBilateralFilter
lmrcImageBilateralFilter()
in lmrcImageBilateralFilter.c
lmrcImageBilateralFilter.h
Takuo Yasunaga [Wed, 3 Apr 2013 22:51:58 +0000 (07:51 +0900)]
Add mrcImageConvolution
Modify array2mrc
modified: Makefile
new file: bin/mrcImageConvolution
modified: env/Eos_env
new file: hostdepend/X86LINUX64/src/Objects/General/Array/src/X86LINUX64/larray2mrc.c
modified: include/Array.h
new file: include/larray2mrc.h
modified: include/lmrcImageMorphology.h
modified: include/mrcImage.h
new file: src/Objects/General/Array/src/larray2mrc.c
modified: src/Tools/filter/array2mrc/src/array2mrc.c
Takuo Yasunaga [Sun, 31 Mar 2013 09:41:02 +0000 (18:41 +0900)]
Modified Eos/Makefile
modified: Makefile
Add new tools for mathematical morphology
new file: mrcImageClosing
new file: mrcImageDilation
new file: mrcImageErosion
new file: mrcImageOpening
Add new object methods
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageDilation.c
new file: lmrcImageErosion.c
new file: lmrcImageMorphology.c
new file: lmrcImageOpening.c
new file: lmrcImageMorphology.h
Add Lee-sigma filter in mrcImageSmoothing
modified: mrcImageSmoothing
Add examples of Makefile in the directory of Integration/
new file: Integration/CTF/Makefile-CTF
new file: Integration/Compare/MakefileCompare
new file: Integration/MultiCTF/Makefile.ForFukunaga
new file: Integration/MultiCTF/Makefile.ForFukunaga2
new file: Integration/RandomConical/Makefile.RandomConical
new file: Integration/RandomConical/Makefile.To.RandomConical
new file: Integration/SingleParticle/Makefile-fromKanae
new file: Integration/Tomography/Makefile.Tomo
new file: Integration/Tomography/Makefile.Tomo2
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion
new file: Integration/Tomography/Makefile.Tomo2-TakazakiVersion2
new file: Integration/Tomography/Makefile.fromMingyue20090502
new file: Integration/Tomography/Makefile.fromMingyue20090519
new file: Integration/Tomography/Makefile.fromMingyue2009059
new file: Integration/Tomography/Makefile.fromMingyue20110507
Takuo Yasunaga [Fri, 29 Mar 2013 11:44:08 +0000 (20:44 +0900)]
modified: Makefile
Takuo Yasunaga [Fri, 29 Mar 2013 10:03:54 +0000 (19:03 +0900)]
Modified Eos/Makefile
Takuo Yasunaga [Fri, 29 Mar 2013 03:46:30 +0000 (12:46 +0900)]
Eos_env
Takuo Yasunaga [Sun, 24 Mar 2013 19:44:40 +0000 (04:44 +0900)]
update pdbMove. Add -toOrigin -originTo -GCtoOrigin
Takuo Yasunaga [Sun, 24 Mar 2013 12:12:44 +0000 (21:12 +0900)]
Change util directories
Takuo Yasunaga [Sun, 24 Mar 2013 01:26:08 +0000 (10:26 +0900)]
Update pdbPCA, -oU -oM -oPDB
Takuo Yasunaga [Wed, 6 Mar 2013 23:49:25 +0000 (08:49 +0900)]
mrcInfoSet has been updated and renewed to set FixedValues as default values.
Takuo Yasunaga [Wed, 6 Feb 2013 23:03:11 +0000 (08:03 +0900)]
Add mrcImageToPointsSet and Add a function of rmsd calculcation using mrcImageSubtraction and mrcImageNormalizedSubtraction. Modify mrcImageInit.
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.
Takuo Yasunaga [Wed, 30 Jan 2013 19:26:56 +0000 (04:26 +0900)]
mrcImageSymetryFind and mrcImage3DWindowing modified
Takuo Yasunaga [Mon, 24 Sep 2012 21:38:51 +0000 (06:38 +0900)]
Delete .EosLog
Takuo Yasunaga [Sun, 16 Sep 2012 08:28:18 +0000 (17:28 +0900)]
Fixed conflict
Takuo Yasunaga [Sun, 16 Sep 2012 07:21:13 +0000 (16:21 +0900)]
Add Tools/Makefile
Takuo Yasunaga [Sun, 16 Sep 2012 03:47:17 +0000 (12:47 +0900)]
mrcImageAverage: add -w and -oW options
Takuo Yasunaga [Sun, 9 Sep 2012 16:29:50 +0000 (01:29 +0900)]
merge
Takuo Yasunaga [Sun, 9 Sep 2012 16:16:13 +0000 (01:16 +0900)]
merge
Takuo Yasunaga [Sun, 9 Sep 2012 15:48:02 +0000 (00:48 +0900)]
Newly updated. mrc2000
Takuo Yasunaga [Wed, 21 Sep 2011 21:03:14 +0000 (06:03 +0900)]
mrcImageTransformSign
Takuo Yasunaga [Wed, 21 Sep 2011 20:54:14 +0000 (05:54 +0900)]
add mrcImageParticleCandidateExtract
Takuo Yasunaga [Sat, 17 Sep 2011 05:44:19 +0000 (14:44 +0900)]
test
Takuo Yasunaga [Tue, 8 Mar 2011 15:01:44 +0000 (00:01 +0900)]
Fixed
Takuo Yasunaga [Sat, 19 Feb 2011 00:13:09 +0000 (09:13 +0900)]
Add util
Takuo Yasunaga [Wed, 16 Feb 2011 09:57:58 +0000 (18:57 +0900)]
Add mrcImageTiltAxisSearchHelp and lib/bin
Takuo Yasunaga [Sun, 13 Feb 2011 18:16:18 +0000 (03:16 +0900)]
Add a new tool, mrcImageTiltAxisSearchHelp
Takuo Yasunaga [Sat, 12 Feb 2011 22:42:57 +0000 (07:42 +0900)]
Clean env
Takuo Yasunaga [Sat, 12 Feb 2011 22:41:03 +0000 (07:41 +0900)]
Clean env
Takuo Yasunaga [Sat, 12 Feb 2011 22:37:05 +0000 (07:37 +0900)]
Add env and modify Makefile
Takuo Yasunaga [Sat, 12 Feb 2011 21:05:49 +0000 (06:05 +0900)]
Eos:Extensible object-oriented system for image analysis of electron micrographs
Takuo Yasunaga [Fri, 16 Apr 2010 06:15:56 +0000 (15:15 +0900)]
Add mrcImageTransformSign; Modified mrcImageDisplayDensityAsTempFactor
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