--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<!--PLEASE DO NOT EDIT THIS FILE
+Created with Workflow PetriNet Designer Version 3.2.0 (woped.org)-->
+<pnml>
+ <net type="http://www.informatik.hu-berlin.de/top/pntd/ptNetb" id="noID">
+ <place id="p3">
+ <name>
+ <text>>'message.txt'</text>
+ <graphics>
+ <offset x="400" y="90"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="420" y="50"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <transition id="t2">
+ <name>
+ <text>Hello</text>
+ <graphics>
+ <offset x="270" y="90"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="270" y="50"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ <toolspecific tool="WoPeD" version="1.0">
+ <time>0</time>
+ <timeUnit>1</timeUnit>
+ <orientation>1</orientation>
+ </toolspecific>
+ </transition>
+ <arc id="a3" source="t2" target="p3">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <toolspecific tool="WoPeD" version="1.0">
+ <bounds>
+ <position x="11" y="33"/>
+ <dimension x="755" y="474"/>
+ </bounds>
+ <scale>100</scale>
+ <treeWidthRight>597</treeWidthRight>
+ <overviewPanelVisible>true</overviewPanelVisible>
+ <treeHeightOverview>100</treeHeightOverview>
+ <treePanelVisible>true</treePanelVisible>
+ <verticalLayout>false</verticalLayout>
+ <resources/>
+ <simulations/>
+ <partnerLinks/>
+ <variables/>
+ </toolspecific>
+ </net>
+</pnml>
\ No newline at end of file
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<!--PLEASE DO NOT EDIT THIS FILE
+Created with Workflow PetriNet Designer Version 3.2.0 (woped.org)-->
+<pnml>
+ <net type="http://www.informatik.hu-berlin.de/top/pntd/ptNetb" id="noID">
+ <place id="p1">
+ <name>
+ <text><'*.in'</text>
+ <graphics>
+ <offset x="10" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="10" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <place id="p3">
+ <name>
+ <text>'{$*}.out'</text>
+ <graphics>
+ <offset x="410" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="410" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <place id="p4">
+ <name>
+ <text>'*.route'</text>
+ <graphics>
+ <offset x="260" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="270" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <place id="p5">
+ <name>
+ <text>'{$*}.route'</text>
+ <graphics>
+ <offset x="130" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="140" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <place id="p6">
+ <name>
+ <text>>'*.out'</text>
+ <graphics>
+ <offset x="530" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="530" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ </place>
+ <transition id="t6">
+ <name>
+ <text/>
+ <graphics>
+ <offset x="200" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="200" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ <toolspecific tool="WoPeD" version="1.0">
+ <time>0</time>
+ <timeUnit>1</timeUnit>
+ <orientation>1</orientation>
+ </toolspecific>
+ </transition>
+ <transition id="t7">
+ <name>
+ <text/>
+ <graphics>
+ <offset x="470" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="470" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ <toolspecific tool="WoPeD" version="1.0">
+ <time>0</time>
+ <timeUnit>1</timeUnit>
+ <orientation>1</orientation>
+ </toolspecific>
+ </transition>
+ <transition id="t1">
+ <name>
+ <text>First</text>
+ <graphics>
+ <offset x="80" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="80" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ <toolspecific tool="WoPeD" version="1.0">
+ <time>0</time>
+ <timeUnit>1</timeUnit>
+ <orientation>1</orientation>
+ </toolspecific>
+ </transition>
+ <transition id="t2">
+ <name>
+ <text>Second</text>
+ <graphics>
+ <offset x="340" y="60"/>
+ </graphics>
+ </name>
+ <graphics>
+ <position x="340" y="20"/>
+ <dimension x="40" y="40"/>
+ </graphics>
+ <toolspecific tool="WoPeD" version="1.0">
+ <time>0</time>
+ <timeUnit>1</timeUnit>
+ <orientation>1</orientation>
+ </toolspecific>
+ </transition>
+ <arc id="a1" source="p1" target="t1">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a11" source="t6" target="p4">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a10" source="p5" target="t6">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a3" source="t2" target="p3">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a13" source="t7" target="p6">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a12" source="p3" target="t7">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a6" source="p4" target="t2">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <arc id="a9" source="t1" target="p5">
+ <inscription>
+ <text>1</text>
+ </inscription>
+ <graphics/>
+ <toolspecific tool="WoPeD" version="1.0">
+ <probability>1.0</probability>
+ <displayProbabilityOn>false</displayProbabilityOn>
+ <displayProbabilityPosition x="500.0" y="0.0"/>
+ </toolspecific>
+ </arc>
+ <toolspecific tool="WoPeD" version="1.0">
+ <bounds>
+ <position x="11" y="33"/>
+ <dimension x="755" y="474"/>
+ </bounds>
+ <scale>100</scale>
+ <treeWidthRight>597</treeWidthRight>
+ <overviewPanelVisible>true</overviewPanelVisible>
+ <treeHeightOverview>100</treeHeightOverview>
+ <treePanelVisible>true</treePanelVisible>
+ <verticalLayout>false</verticalLayout>
+ <resources/>
+ <simulations/>
+ <partnerLinks/>
+ <variables/>
+ </toolspecific>
+ </net>
+</pnml>
\ No newline at end of file
--- /dev/null
+Rule Main
+ input '*.mrc'.all
+ input '*.parameters'.all
+ output '*.roi'.all
+ output '*.tiff'.all
+Flow
+# rule Initial
+ rule First
+ rule Second
+ rule Final
+End
+
+Rule Initial
+ input '${EOS_HOME}/tutorial/SampleData/1VOM.mrc'
+ input '${EOS_HOME}/tutorial/SampleData/1VOM-N.mrc'
+ output '1VOM.mrc'
+ output '1VOM-N.mrc'
+Action
+ ln -s {$I[1]} {$O[1]}
+ ln -s {$I[2]} {$O[2]}
+End
+
+Rule First
+ input '*.mrc'
+ output '{$I[1]}.info'
+Action
+ mrcImageInfo -I -i {$I[1]} \
+ | head -2 | tail -1 \
+ | awk '{printf("%s %s %s", $3, $4, $5)}' \
+ | tr -c '[0-9]' ' ' \
+ > {$O[1]}
+End
+
+Rule Second
+ input '*.mrc'
+ input '*.info'
+ input '{$I[1][1]}.parameters'
+ output '{$I[1][1]}.roi'
+Action
+ Center_x=$(awk '{printf("%s\n", $1)}' {$I[2]})
+ Center_y=$(awk '{printf("%s\n", $2)}' {$I[2]})
+ Center_z=$(awk '{printf("%s\n", $3)}' {$I[2]})
+ N_x=$(awk '{printf("%s\n", $1)}' {$I[3]})
+ N_y=$(awk '{printf("%s\n", $2)}' {$I[3]})
+ N_z=$(awk '{printf("%s\n", $3)}' {$I[3]})
+ mrcImageCenterGet -i {$I[1]} -o {$O[1]} \
+ -Cx $Center_x -Cy $Center_y -Cz $Center_z \
+ -Nx $N_x -Ny $N_y -Nz $N_z
+End
+
+Rule Final
+ input '*.mrc'
+ input '*.roi'
+ output '{$I[1]}-1.tiff'
+ output '{$I[2]}-1.tiff'
+ output '{$I[1]}-2.tiff'
+ output '{$I[2]}-2.tiff'
+Action
+ mrcImageProjection -i {$I[1]} -o {$I[1]}.2d
+ mrc2tiff -i {$I[1]}.2d -o {$O[1]}
+ mrcImageProjection -i {$I[1]} -o {$I[1]}.2d1 -m 1
+ mrc2tiff -i {$I[1]}.2d1 -o {$O[3]}
+ mrcImageProjection -i {$I[2]} -o {$I[2]}.2d
+ mrc2tiff -i {$I[2]}.2d -o {$O[2]}
+ mrcImageProjection -i {$I[2]} -o {$I[2]}.2d1 -m 1
+ mrc2tiff -i {$I[2]}.2d1 -o {$O[4]}
+End
OSDN Git Service
